SRR3551154_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551154_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128656
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	806	0.6264768063673672	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	712	0.5534137545081457	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	564	0.438378311155329	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	345	0.26815694565352566	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	219	0.17022136550180325	TruSeq Adapter, Index 13 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTT	216	0.1678895659743813	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	185	0.14379430419102102	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	157	0.1220308419350827	No Hit
GCAAGAGGGAACTGAACTAATTATATTTTATATTTTATTTGAAGCAACCTT	136	0.10570824524312897	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	132	0.10259917920656635	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	131	0.1018219126974257	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTC	129	0.1002673796791444	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	129	0.1002673796791444	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCTTCG	25	3.8714534E-5	45.000004	23
ACGGGAC	25	3.8714534E-5	45.000004	5
AGGCAGT	25	3.8714534E-5	45.000004	7
GTGTAAT	25	3.8714534E-5	45.000004	8
CGGGAGC	25	3.8714534E-5	45.000004	6
GCTAGCG	25	3.8714534E-5	45.000004	1
CTTAACT	20	7.009924E-4	45.0	45
TCGTTTG	20	7.009924E-4	45.0	1
TTAATCG	20	7.009924E-4	45.0	20
ATAGGAC	20	7.009924E-4	45.0	5
CGTTGAT	20	7.009924E-4	45.0	25
TTGTACT	20	7.009924E-4	45.0	31
AGGCGAT	35	1.2007149E-7	45.0	7
GAGGTCA	35	1.2007149E-7	45.0	33
TATTCTC	20	7.009924E-4	45.0	32
GTCACCA	20	7.009924E-4	45.0	14
ACCAGTT	20	7.009924E-4	45.0	17
GTACTTT	20	7.009924E-4	45.0	33
GCCTCCG	20	7.009924E-4	45.0	25
CGAATAT	35	1.2007149E-7	45.0	14