SRR3551152_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551152_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	131981
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	998	0.7561694486327577	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG	535	0.40536137777407355	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	524	0.39702684477311123	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGC	455	0.3447465923125298	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	174	0.13183715837885757	No Hit
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	163	0.12350262537789532	TruSeq Adapter, Index 21 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTT	156	0.11819883165001023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCAT	20	7.01058E-4	45.000004	25
CGCATCA	20	7.01058E-4	45.000004	26
CAATTGG	25	3.8719976E-5	45.000004	2
TAACGTC	40	6.7357178E-9	45.000004	32
TACGGCT	25	3.8719976E-5	45.000004	7
GCGCATC	20	7.01058E-4	45.000004	25
ATCACGG	20	7.01058E-4	45.000004	2
ATGTAGG	25	3.8719976E-5	45.000004	2
GGCTTAA	20	7.01058E-4	45.000004	8
AACGGGC	20	7.01058E-4	45.000004	4
AAACGGC	20	7.01058E-4	45.000004	6
AACGGCT	20	7.01058E-4	45.000004	7
TACGAAA	20	7.01058E-4	45.000004	20
CGGGCAT	20	7.01058E-4	45.000004	6
GATATGG	20	7.01058E-4	45.000004	2
GCTAGTC	20	7.01058E-4	45.000004	37
CATACGA	20	7.01058E-4	45.000004	18
TAGATGG	30	2.1508713E-6	45.000004	2
ATAGTTA	20	7.01058E-4	45.000004	37
CGGTAGT	25	3.8719976E-5	45.000004	12