##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551152_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 131981 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.94936392359506 33.0 31.0 34.0 30.0 34.0 2 32.06001621445511 33.0 31.0 34.0 30.0 34.0 3 31.77277789984922 33.0 31.0 34.0 30.0 34.0 4 35.6215743175154 37.0 35.0 37.0 33.0 37.0 5 35.76980019851342 37.0 35.0 37.0 35.0 37.0 6 35.76940620240792 37.0 35.0 37.0 35.0 37.0 7 26.855107932202362 35.0 11.0 37.0 0.0 37.0 8 31.149127525931764 35.0 19.0 37.0 17.0 37.0 9 35.932520590084934 39.0 32.0 39.0 32.0 39.0 10 36.680325198324 38.0 35.0 39.0 33.0 39.0 11 37.018017744978444 39.0 37.0 39.0 34.0 39.0 12 37.09299065774619 39.0 37.0 39.0 34.0 39.0 13 37.04250611830491 39.0 37.0 39.0 33.0 39.0 14 38.284245459573725 40.0 37.0 41.0 34.0 41.0 15 38.29294368128746 40.0 37.0 41.0 34.0 41.0 16 38.234867139967115 40.0 37.0 41.0 34.0 41.0 17 38.10894750001894 40.0 37.0 41.0 33.0 41.0 18 37.98062599919685 40.0 37.0 41.0 33.0 41.0 19 37.82423985270607 40.0 37.0 41.0 33.0 41.0 20 37.85710822012259 40.0 36.0 41.0 33.0 41.0 21 37.81647358331881 40.0 36.0 41.0 33.0 41.0 22 37.792394359794216 40.0 36.0 41.0 33.0 41.0 23 37.76813329191323 39.0 36.0 41.0 33.0 41.0 24 37.6739757995469 39.0 36.0 41.0 33.0 41.0 25 37.59925292276919 39.0 35.0 41.0 33.0 41.0 26 37.448041763587185 39.0 35.0 41.0 33.0 41.0 27 37.3547859161546 39.0 35.0 41.0 33.0 41.0 28 37.31896257794683 39.0 35.0 41.0 33.0 41.0 29 37.26360612512407 39.0 35.0 41.0 32.0 41.0 30 37.16149294216592 39.0 35.0 41.0 32.0 41.0 31 37.03666436835605 39.0 35.0 41.0 32.0 41.0 32 36.883695380395665 39.0 35.0 41.0 31.0 41.0 33 36.70248747925838 39.0 35.0 41.0 31.0 41.0 34 36.48886582159553 39.0 35.0 41.0 30.0 41.0 35 36.27800971351937 39.0 35.0 41.0 30.0 41.0 36 36.088399087747476 39.0 35.0 41.0 29.0 41.0 37 36.012645759616916 39.0 35.0 40.0 29.0 41.0 38 35.83392306468355 39.0 35.0 40.0 28.0 41.0 39 35.73258272024003 39.0 35.0 40.0 27.0 41.0 40 35.469984315924265 38.0 35.0 40.0 26.0 41.0 41 35.36775748024337 38.0 35.0 40.0 26.0 41.0 42 35.28676097317038 38.0 34.0 40.0 25.0 41.0 43 35.25672634697418 38.0 34.0 40.0 25.0 41.0 44 35.061743735840764 38.0 34.0 40.0 24.0 41.0 45 34.93999136239307 38.0 34.0 40.0 24.0 41.0 46 34.71918685265303 38.0 34.0 40.0 23.0 41.0 47 34.50495147028739 38.0 33.0 40.0 23.0 41.0 48 34.43134996704071 37.0 33.0 40.0 23.0 41.0 49 34.224077708154965 37.0 33.0 40.0 22.0 41.0 50 34.04249096460854 37.0 33.0 40.0 22.0 41.0 51 31.830324061796773 35.0 29.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 9.0 11 7.0 12 8.0 13 1.0 14 10.0 15 13.0 16 13.0 17 25.0 18 48.0 19 98.0 20 173.0 21 289.0 22 418.0 23 654.0 24 908.0 25 1380.0 26 1757.0 27 2007.0 28 2269.0 29 2379.0 30 2960.0 31 3549.0 32 4535.0 33 6177.0 34 9506.0 35 11787.0 36 12749.0 37 19263.0 38 23902.0 39 25072.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47718232169782 19.974844864033457 24.181510975064594 14.366461839204128 2 33.19796031246922 25.824171661072427 24.07846583977997 16.899402186678387 3 30.533940491434375 24.520196088830968 27.988119502049535 16.95774391768512 4 27.58881960282162 23.719323235920324 30.16267493048242 18.529182230775643 5 25.36804540047431 27.74641804502163 26.690963093172503 20.194573461331554 6 24.703555814852137 34.72696827573666 26.706874474356155 13.862601435055048 7 58.09775649525311 27.820671157212022 9.646085421386411 4.435486926148461 8 78.58403861161834 6.044051795334177 10.80988930224805 4.562020290799433 9 72.8551837006842 7.277562679476592 12.402542790250113 7.464710829589108 10 40.93846841590835 24.21409142225017 19.980148657761347 14.867291504080132 11 30.706692629999772 24.82099696168388 25.424871761844507 19.04743864647184 12 28.336654518453415 21.440964987384547 30.5506095574363 19.671770936725743 13 24.310317394170372 23.21318977731643 32.49255574666051 19.98393708185269 14 21.117433569983557 27.00464460793599 30.61122434289784 21.266697479182607 15 19.266409558951665 25.571862616588753 35.783180912404056 19.378546912055523 16 22.91238890446352 24.487615641645387 32.00536440851335 20.594631045377742 17 22.652503011797155 24.49822322910116 29.403474742576584 23.445799016525108 18 22.74190982035293 26.008289071911868 30.45514127033437 20.79465983740084 19 24.406543366090574 27.42364431243891 27.61912699555239 20.550685325918124 20 25.838567672619543 26.360612512407087 29.06327425917367 18.7375455557997 21 25.330918844379113 26.59549480607057 28.995082625529434 19.07850372402088 22 23.176820906039506 24.380782082269416 28.816269008417876 23.626128003273198 23 23.104083163485654 26.519726324243642 28.868549260878464 21.507641251392247 24 23.176063221221234 24.075435100506894 29.970980671460286 22.777521006811586 25 23.21243209249816 26.755366302725392 27.56760442791008 22.464597176866366 26 20.999992423151816 27.238011531962936 28.9761405050727 22.785855539812548 27 22.045597472363447 27.79112144929952 28.48137231874285 21.681908759594183 28 20.17941976496617 26.872807449557136 30.55212492707284 22.395647858403862 29 21.90012198725574 26.17952584084073 29.667149059334296 22.253203112569235 30 22.238807101022118 26.79173517400232 29.53455421613717 21.434903508838392 31 23.10862927239527 25.933278274903206 27.386517756343714 23.571574696357807 32 23.479894833347224 27.266803555057166 27.315295383426403 21.938006228169208 33 23.346542305331827 27.751721838749514 26.591706381979225 22.31002947393943 34 22.20546896901827 26.426531091596516 29.315583303657345 22.05241663572787 35 20.797690576673915 26.975852584841757 29.076154901084244 23.15030193740008 36 21.765254089603804 29.68836423424584 27.74944878429471 20.796932891855647 37 22.532031125692335 28.731408308771716 27.372879429614873 21.363681135921077 38 21.393988528651853 28.702616285677486 26.021927398640717 23.88146778702995 39 24.04437002295785 26.387889165864785 26.625044513983077 22.942696297194292 40 22.57824989960676 26.132549382108035 29.861874057629507 21.4273266606557 41 20.356718012441185 27.430463475803336 29.196626787189068 23.016191724566415 42 21.403080746471083 27.11223585213023 29.928550321637204 21.55613307976148 43 22.264568384843272 26.29090550912631 27.805517460846634 23.639008645183775 44 21.290185708548957 26.251505898576312 28.22072874125821 24.23757965161652 45 21.489456815753783 25.921155317810896 27.85931308294376 24.730074783491563 46 22.77524795235678 27.464559292625452 27.11753964585812 22.642653109159653 47 21.143952538622983 26.462899962873443 30.509694577249757 21.883452921253816 48 21.58947121176533 25.652177207325295 29.058728150264052 23.69962343064532 49 20.993930944605662 25.246815829551224 30.033110826558367 23.726142399284743 50 19.377031542418983 25.95297808017821 29.98689205264394 24.683098324758866 51 20.122593403595975 25.264242580371416 28.013880785870693 26.59928323016192 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 61.0 1 200.5 2 340.0 3 1146.5 4 1953.0 5 1368.0 6 783.0 7 662.5 8 542.0 9 553.0 10 564.0 11 543.0 12 522.0 13 493.0 14 464.0 15 470.0 16 476.0 17 482.5 18 489.0 19 482.0 20 475.0 21 521.5 22 568.0 23 618.0 24 668.0 25 831.0 26 1137.0 27 1280.0 28 1515.0 29 1750.0 30 2135.0 31 2520.0 32 2618.5 33 2717.0 34 3040.5 35 3364.0 36 3594.5 37 3825.0 38 4257.0 39 4689.0 40 5589.0 41 6489.0 42 7409.0 43 8329.0 44 10423.5 45 12518.0 46 11715.0 47 10912.0 48 10618.5 49 10325.0 50 9345.0 51 8365.0 52 7629.0 53 6893.0 54 6674.5 55 6456.0 56 6267.5 57 6079.0 58 5937.5 59 5796.0 60 5678.5 61 5561.0 62 5218.0 63 4875.0 64 4169.0 65 3463.0 66 2954.0 67 2445.0 68 1977.5 69 1510.0 70 1306.0 71 1102.0 72 939.5 73 777.0 74 628.5 75 377.5 76 275.0 77 205.0 78 135.0 79 104.5 80 74.0 81 55.0 82 36.0 83 29.5 84 23.0 85 15.5 86 8.0 87 6.5 88 5.0 89 5.0 90 5.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 131981.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.51361938460839 #Duplication Level Percentage of deduplicated Percentage of total 1 73.57159346684365 38.635106568369686 2 9.920932648467709 10.419681620839363 3 4.9734518381716395 7.835218705722793 4 3.40941882610954 7.161636902281389 5 2.2652507647024875 5.947825823413976 6 1.6029895538754544 5.050726998583129 7 1.174467593928551 4.31728809449845 8 0.906100305880995 3.806608526984945 9 0.594447971374156 2.809495306142551 >10 1.5481618283603624 10.677294459050923 >50 0.014428348819761067 0.5273486335154303 >100 0.014428348819761067 1.2532106894174162 >500 0.00432850464592832 1.5585576711799425 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 998 0.7561694486327577 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG 535 0.40536137777407355 No Hit GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC 524 0.39702684477311123 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGC 455 0.3447465923125298 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 174 0.13183715837885757 No Hit GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC 163 0.12350262537789532 TruSeq Adapter, Index 21 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTT 156 0.11819883165001023 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09546828710193134 0.0 2 0.0 0.0 0.0 0.5053757737856207 0.0 3 0.0 0.0 0.0 0.7167698380827543 0.0 4 0.0 0.0 0.0 1.0781854963972086 0.0 5 0.0 0.0 0.0 2.2238049416203847 0.0 6 0.0 0.0 0.0 2.7549419992271615 0.0 7 0.0 0.0 0.0 3.280017578287784 0.0 8 0.0 0.0 0.0 4.208939165485941 0.0 9 0.0 0.0 0.0 4.560504921162894 0.0 10 0.0 0.0 0.0 5.937218235958206 0.0 11 0.0 0.0 0.0 6.9419083049832935 0.0 12 0.0 0.0 0.0 8.192088255127633 0.0 13 0.0 0.0 0.0 8.575476773171896 0.0 14 0.0 0.0 0.0 8.752017335828642 0.0 15 0.0 0.0 0.0 9.047514414953667 0.0 16 0.0 0.0 0.0 9.493790772914283 0.0 17 0.0 0.0 0.0 10.03553541797683 0.0 18 0.0 0.0 0.0 10.640167902955728 0.0 19 0.0 0.0 0.0 11.000068191633645 0.0 20 0.0 0.0 0.0 11.382699024859638 0.0 21 0.0 0.0 0.0 11.8327638069116 0.0 22 0.0 0.0 0.0 12.301770709420296 0.0 23 0.0 0.0 0.0 12.794265841295339 0.0 24 0.0 0.0 0.0 13.194323425341526 0.0 25 0.0 0.0 0.0 13.515581788287708 0.0 26 0.0 0.0 0.0 13.861843750236776 0.0 27 0.0 0.0 0.0 14.217197930005076 0.0 28 0.0 0.0 0.0 14.584675066865685 0.0 29 0.0 0.0 0.0 14.958213682272449 0.0 30 0.0 0.0 0.0 15.390851713504217 0.0 31 0.0 0.0 0.0 15.78409013418598 0.0 32 0.0 0.0 0.0 16.193239936051402 0.0 33 0.0 0.0 0.0 16.608451216462974 0.0 34 0.0 0.0 0.0 16.972897614050506 0.0 35 0.0 0.0 0.0 17.361589925822656 0.0 36 0.0 0.0 0.0 17.7775588910525 0.0 37 0.0 0.0 0.0 18.183677953644843 0.0 38 0.0 0.0 0.0 18.614042930421803 0.0 39 0.0 0.0 0.0 19.023192732287225 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGCAT 20 7.01058E-4 45.000004 25 CGCATCA 20 7.01058E-4 45.000004 26 CAATTGG 25 3.8719976E-5 45.000004 2 TAACGTC 40 6.7357178E-9 45.000004 32 TACGGCT 25 3.8719976E-5 45.000004 7 GCGCATC 20 7.01058E-4 45.000004 25 ATCACGG 20 7.01058E-4 45.000004 2 ATGTAGG 25 3.8719976E-5 45.000004 2 GGCTTAA 20 7.01058E-4 45.000004 8 AACGGGC 20 7.01058E-4 45.000004 4 AAACGGC 20 7.01058E-4 45.000004 6 AACGGCT 20 7.01058E-4 45.000004 7 TACGAAA 20 7.01058E-4 45.000004 20 CGGGCAT 20 7.01058E-4 45.000004 6 GATATGG 20 7.01058E-4 45.000004 2 GCTAGTC 20 7.01058E-4 45.000004 37 CATACGA 20 7.01058E-4 45.000004 18 TAGATGG 30 2.1508713E-6 45.000004 2 ATAGTTA 20 7.01058E-4 45.000004 37 CGGTAGT 25 3.8719976E-5 45.000004 12 >>END_MODULE