##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551149_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 162283 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03951122421942 33.0 31.0 34.0 30.0 34.0 2 32.152049198005955 33.0 31.0 34.0 30.0 34.0 3 32.041544708934396 33.0 31.0 34.0 30.0 34.0 4 35.787180419390815 37.0 35.0 37.0 35.0 37.0 5 35.87327076773291 37.0 35.0 37.0 35.0 37.0 6 35.85922739904981 37.0 35.0 37.0 35.0 37.0 7 26.769883475163756 36.0 10.0 37.0 0.0 37.0 8 31.142849220189422 36.0 19.0 37.0 17.0 37.0 9 35.955515981341236 39.0 32.0 39.0 32.0 39.0 10 36.70704879747108 38.0 35.0 39.0 33.0 39.0 11 37.06445530338976 39.0 37.0 39.0 34.0 39.0 12 37.07781468175964 39.0 37.0 39.0 34.0 39.0 13 37.04756505610569 39.0 37.0 39.0 33.0 39.0 14 38.22872389591023 40.0 37.0 41.0 33.0 41.0 15 38.322128627151336 40.0 37.0 41.0 34.0 41.0 16 38.252189077106046 40.0 37.0 41.0 34.0 41.0 17 38.12857169266035 40.0 37.0 41.0 33.0 41.0 18 38.043325548578714 40.0 37.0 41.0 33.0 41.0 19 37.941823850927086 40.0 37.0 41.0 33.0 41.0 20 37.99465748106702 40.0 36.0 41.0 34.0 41.0 21 37.92744156812482 40.0 36.0 41.0 33.0 41.0 22 37.92307881909997 40.0 36.0 41.0 33.0 41.0 23 37.871151013969424 40.0 36.0 41.0 33.0 41.0 24 37.83048748174485 40.0 36.0 41.0 33.0 41.0 25 37.726588736959506 40.0 36.0 41.0 33.0 41.0 26 37.617723359809716 40.0 36.0 41.0 33.0 41.0 27 37.47387588348749 40.0 36.0 41.0 33.0 41.0 28 37.39875402845646 40.0 36.0 41.0 33.0 41.0 29 37.37356962836526 40.0 36.0 41.0 33.0 41.0 30 37.27527837173333 39.0 35.0 41.0 32.0 41.0 31 37.17059088136157 39.0 35.0 41.0 32.0 41.0 32 37.038851882205776 39.0 35.0 41.0 31.0 41.0 33 36.908425405002376 39.0 35.0 41.0 31.0 41.0 34 36.7762612226789 39.0 35.0 41.0 31.0 41.0 35 36.68551234571705 39.0 35.0 41.0 31.0 41.0 36 36.549077845492135 39.0 35.0 41.0 30.0 41.0 37 36.469205030717944 39.0 35.0 41.0 30.0 41.0 38 36.37362508703931 39.0 35.0 41.0 30.0 41.0 39 36.34298725066704 39.0 35.0 41.0 30.0 41.0 40 36.149726095770966 39.0 35.0 40.0 30.0 41.0 41 36.02330496724857 39.0 35.0 40.0 29.0 41.0 42 35.97122927232058 38.0 35.0 40.0 29.0 41.0 43 35.92722589550353 38.0 35.0 40.0 29.0 41.0 44 35.7329171878755 38.0 35.0 40.0 28.0 41.0 45 35.64778812321685 38.0 35.0 40.0 28.0 41.0 46 35.530536162136514 38.0 34.0 40.0 27.0 41.0 47 35.398316521138995 38.0 34.0 40.0 26.0 41.0 48 35.317007942914536 38.0 34.0 40.0 26.0 41.0 49 35.151494611265505 38.0 34.0 40.0 26.0 41.0 50 34.94377722866844 38.0 34.0 40.0 26.0 41.0 51 32.946876752340046 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 16.0 10 10.0 11 9.0 12 9.0 13 7.0 14 6.0 15 12.0 16 20.0 17 49.0 18 75.0 19 122.0 20 181.0 21 359.0 22 465.0 23 668.0 24 922.0 25 1298.0 26 1617.0 27 1835.0 28 2108.0 29 2537.0 30 3121.0 31 4047.0 32 5136.0 33 7279.0 34 11838.0 35 14327.0 36 14950.0 37 24295.0 38 31058.0 39 33894.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.803004627718245 20.88820147520073 23.726453171311846 12.582340725769182 2 32.32008281828657 24.331568925888725 25.724197851900694 17.62415040392401 3 33.289377199090474 23.972936167066177 26.76189126402642 15.975795369816925 4 29.80349143163486 26.014431579401414 25.201037693412125 18.9810392955516 5 25.8585310845868 31.129569948793158 23.789922542718582 19.221976423901456 6 27.114978155444504 35.6623922407153 23.22670889741994 13.995920706420264 7 60.893007893617934 28.72882557014598 6.110313464749851 4.267853071486231 8 82.23597049598541 6.467097601104244 7.776538516049124 3.520393386861224 9 76.26183888638982 8.843193680175988 9.59003715731161 5.304930276122576 10 42.19172679824751 28.385597998558076 16.428707874515506 12.993967328678913 11 32.35335802271341 26.854322387434298 23.82874361454989 16.963575975302405 12 32.00951424363612 22.878551665916945 26.960926283098047 18.15100780734889 13 25.90166560884381 24.30260717388759 27.986295545436057 21.809431671832538 14 20.251042931175785 28.529174343584973 28.88102882002428 22.338753905214965 15 20.74955479008892 26.759426434068878 32.42422188399278 20.06679689184942 16 23.9673902996617 25.42472101205918 31.136348231176402 19.471540457102716 17 23.337626245509387 25.812315522882866 27.68989974304148 23.16015848856627 18 24.62303506836822 27.154415434765195 27.223430673576406 20.99911882329018 19 26.246125595410486 28.42503527787877 25.379737865334018 19.949101261376732 20 28.25188097336135 25.708792664666046 26.933196946075682 19.106129415896923 21 26.234417653112157 27.79650363870522 26.705200175002926 19.263878533179692 22 24.940998132891306 25.303944344139556 27.14270749246686 22.61235003050227 23 24.83994010463203 26.127813757448408 28.13849879531436 20.893747342605202 24 24.562030526919024 25.300247099203244 28.646869974057665 21.490852399820067 25 23.171250223375214 26.495073421122363 27.2801217625999 23.053554592902522 26 22.945718282260003 28.586481640097855 26.2368824830697 22.230917594572443 27 21.887073815495153 29.540987041156498 26.870959989647712 21.700979153700633 28 21.296747040663533 28.728209362656592 29.549613946007902 20.425429650671976 29 22.693073211611814 26.85247376496614 28.227232673785917 22.227220349636127 30 23.34871798031833 26.780377488707995 27.804514336067243 22.06639019490643 31 25.252182915031153 26.798247505900186 26.47843581890894 21.471133760159724 32 25.912757343652753 27.38672565826365 25.907211476248282 20.79330552183531 33 25.026650973915938 28.206897826636183 25.92631390841924 20.840137291028636 34 23.125650869160662 26.91162968394718 28.57230886784198 21.39041057905018 35 23.12010500175619 26.88081930947789 27.697294232914103 22.301781455851817 36 24.1935384482663 29.342568229574262 25.448136896655843 21.015756425503596 37 23.197747145418806 29.953846059045002 26.116105815150075 20.732300980386114 38 23.284632401422208 28.8323484283628 25.1412655669417 22.741753603273292 39 24.673564082497858 26.557926585039716 26.380458828096597 22.38805050436583 40 24.284737156695403 25.80307241054208 28.025116617267365 21.887073815495153 41 20.97816776865106 27.113129532976345 28.164379509868564 23.744323188504033 42 22.29623558844734 27.893864422028187 26.536359322911213 23.27354066661326 43 23.070808402605326 26.244276972942327 26.382307450564753 24.30260717388759 44 22.37449393959934 26.87404102709464 27.19446892157527 23.55699611173074 45 23.067727365158397 26.575796602231904 26.32007049413679 24.036405538472916 46 21.550008318801105 28.837278088277884 26.241195935495398 23.37151765742561 47 21.876598288175593 27.39165531817874 28.187795394465226 22.543950999180442 48 23.101618777074616 25.191794581071335 28.61667580707776 23.089910834776287 49 21.93082454724155 26.085911648170175 28.5193150237548 23.463948780833483 50 20.0113382178047 27.08416778097521 28.383133168600533 24.52136083261956 51 20.71874441561963 26.7193729472588 27.38117979085918 25.180702846262392 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 87.0 1 253.0 2 419.0 3 738.0 4 1057.0 5 745.5 6 434.0 7 414.5 8 395.0 9 365.5 10 336.0 11 338.5 12 341.0 13 339.0 14 337.0 15 344.0 16 351.0 17 362.5 18 374.0 19 470.5 20 567.0 21 690.0 22 813.0 23 847.0 24 881.0 25 1117.0 26 1643.5 27 1934.0 28 2343.0 29 2752.0 30 3098.0 31 3444.0 32 3889.0 33 4334.0 34 4988.0 35 5642.0 36 5788.0 37 5934.0 38 6230.0 39 6526.0 40 7333.5 41 8141.0 42 8580.0 43 9019.0 44 9308.0 45 9597.0 46 10173.5 47 10750.0 48 10838.0 49 10926.0 50 11063.5 51 11201.0 52 10715.0 53 10229.0 54 9564.5 55 8900.0 56 8865.0 57 8830.0 58 8573.5 59 8317.0 60 8245.5 61 8174.0 62 7383.0 63 6592.0 64 5471.0 65 4350.0 66 3718.0 67 3086.0 68 2542.0 69 1998.0 70 1707.0 71 1416.0 72 1169.0 73 922.0 74 762.5 75 529.5 76 456.0 77 338.0 78 220.0 79 163.0 80 106.0 81 83.5 82 61.0 83 45.5 84 30.0 85 25.5 86 21.0 87 17.0 88 13.0 89 11.5 90 10.0 91 6.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 162283.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.85610322707863 #Duplication Level Percentage of deduplicated Percentage of total 1 67.34625057959 29.535441173752027 2 10.042011493445365 8.808069853280996 3 5.9420269491787385 7.817824417837975 4 4.059237610824633 7.120893747342604 5 2.8930322743814196 6.343856103227079 6 2.2804232060811285 6.000628531639174 7 1.7169914712453105 5.271038864206356 8 1.3334082702224221 4.6782472594171916 9 1.1015722696041927 4.3479600451063884 >10 3.255539475348105 18.727161809924638 >50 0.022481066726616178 0.7018603304104558 >100 0.0056202666816540445 0.3358330817152752 >500 0.0014050666704135111 0.31118478213984213 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 505 0.31118478213984213 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05915591898103929 0.0 2 0.0 0.0 0.0 0.28592027507502327 0.0 3 0.0 0.0 0.0 0.39868624563262944 0.0 4 0.0 0.0 0.0 0.5293222333824246 0.0 5 0.0 0.0 0.0 0.9280084790150539 0.0 6 0.0 0.0 0.0 1.1972911518766598 0.0 7 0.0 0.0 0.0 1.430833790353888 0.0 8 0.0 0.0 0.0 1.8923731999038715 0.0 9 0.0 0.0 0.0 2.0655275044212886 0.0 10 0.0 0.0 0.0 2.52891553643943 0.0 11 0.0 0.0 0.0 3.113080236377193 0.0 12 0.0 0.0 0.0 3.5672251560545467 0.0 13 0.0 0.0 0.0 3.8081622844044047 0.0 14 0.0 0.0 0.0 3.9196958399832393 0.0 15 0.0 0.0 0.0 4.121195689012405 0.0 16 0.0 0.0 0.0 4.481677070303112 0.0 17 0.0 0.0 0.0 4.882211938403899 0.0 18 0.0 0.0 0.0 5.33389202812371 0.0 19 0.0 0.0 0.0 5.604407115964087 0.0 20 0.0 0.0 0.0 5.880468071208938 0.0 21 0.0 0.0 0.0 6.195966305774481 0.0 22 0.0 0.0 0.0 6.537345254894228 0.0 23 0.0 0.0 0.0 6.86331901677933 0.0 24 0.0 0.0 0.0 7.150471706833125 0.0 25 0.0 0.0 0.0 7.396338495098069 0.0 26 0.0 0.0 0.0 7.645902528299329 0.0 27 0.0 0.0 0.0 7.874515506861471 0.0 28 0.0 0.0 0.0 8.132090237424746 0.0 29 0.0 0.0 0.0 8.390897382966793 0.0 30 0.0 0.0 0.0 8.682363525446288 0.0 31 0.0 0.0 0.0 8.976910705372713 0.0 32 0.0 0.0 0.0 9.244960963255547 0.0 33 0.0 0.0 0.0 9.534578483266886 0.0 34 0.0 0.0 0.0 9.81310426846928 0.0 35 0.0 0.0 0.0 10.116278353247106 0.0 36 0.0 0.0 0.0 10.400350005853971 0.0 37 0.0 0.0 0.0 10.673329923651892 0.0 38 0.0 0.0 0.0 10.994374025621907 0.0 39 0.0 0.0 0.0 11.304942600272364 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGCG 20 7.0153666E-4 45.000004 20 GCGCGAC 20 7.0153666E-4 45.000004 9 TAGGTAT 25 3.8759597E-5 45.000004 6 CGGTTCG 30 2.1539508E-6 45.000004 29 TTGTCCG 30 2.1539508E-6 45.000004 24 CACGCCA 20 7.0153666E-4 45.000004 27 ACACAAC 20 7.0153666E-4 45.000004 11 CGCGACC 20 7.0153666E-4 45.000004 10 CCTCGTC 20 7.0153666E-4 45.000004 36 GCGTTAG 20 7.0153666E-4 45.000004 1 GGCCCGC 40 6.7520887E-9 45.000004 22 CGTTAGG 25 3.8759597E-5 45.000004 2 CGAGGGT 20 7.0153666E-4 45.000004 5 TCAGACG 25 3.8759597E-5 45.000004 22 TCGTCCC 20 7.0153666E-4 45.000004 38 CGGGATC 25 3.8759597E-5 45.000004 6 AGCGACT 20 7.0153666E-4 45.000004 19 AGTTACC 20 7.0153666E-4 45.000004 10 GGCGATA 35 1.203316E-7 45.000004 8 AGCTACG 25 3.8759597E-5 45.000004 9 >>END_MODULE