SRR3551147_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551147_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	131295
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	295	0.2246848699493507	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	212	0.16146844891275372	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	188	0.14318900186602687	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	150	0.11424654404204272	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGG	25	3.8718856E-5	45.0	27
ATAGGAG	20	7.0104457E-4	45.0	5
CTATAGG	20	7.0104457E-4	45.0	3
AGGCGAT	50	2.1827873E-11	45.0	7
CGCCGGT	25	3.8718856E-5	45.0	28
CTATCTC	45	1.9059371E-8	40.000004	5
GGTACCT	40	3.4271034E-7	39.375	8
CGAAAAA	75	0.0	39.0	22
ATCCTGC	35	6.206097E-6	38.571426	20
CTACAGG	35	6.206097E-6	38.571426	2
CACACCC	70	0.0	38.571426	29
AATAGGA	35	6.206097E-6	38.571426	4
AGCATAT	30	1.1344211E-4	37.500004	31
CGGTAGT	30	1.1344211E-4	37.500004	12
TGTACGG	30	1.1344211E-4	37.500004	2
GCATATG	30	1.1344211E-4	37.500004	32
TGCGGGA	85	0.0	37.058823	4
CCATTAT	85	0.0	37.058823	34
TACGGGG	55	2.7102942E-9	36.81818	4
GATTGGG	55	2.7102942E-9	36.81818	3