SRR3551144_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551144_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	160710
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	1692	1.0528280754153443	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	1437	0.8941571775247339	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	1216	0.7566423993528716	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTT	509	0.31671955696596354	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	502	0.3123638852591625	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	353	0.21965030178582542	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	313	0.19476074917553357	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	293	0.18231597287038764	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	270	0.16800448011946986	No Hit
GAATCTATCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	232	0.14435940513969261	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	229	0.1424926886939207	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	223	0.13875925580237697	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	180	0.11200298674631323	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	175	0.10889179267002676	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	170	0.10578059859374027	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	163	0.10142492688693922	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAATA	20	7.0151663E-4	45.0	20
TTGATCC	25	3.875794E-5	45.0	17
TTAGCAG	20	7.0151663E-4	45.0	2
ATAGCGG	20	7.0151663E-4	45.0	2
TATGCGG	25	3.875794E-5	45.0	2
CTGAAGC	40	6.7520887E-9	45.0	5
CAAGGTG	20	7.0151663E-4	45.0	5
CTACGAA	40	6.7520887E-9	45.0	11
TACGAAT	40	6.7520887E-9	45.0	12
TCTAACT	35	1.2032251E-7	45.0	24
TCGTCCC	35	1.2032251E-7	45.0	38
TAGGGTC	20	7.0151663E-4	45.0	5
CGAATGG	20	7.0151663E-4	45.0	2
CGAATAT	40	6.7520887E-9	45.0	14
TCATAGG	20	7.0151663E-4	45.0	3
GCTACGA	40	6.7520887E-9	45.0	10
TAGTGAC	20	7.0151663E-4	45.0	44
TAATGCG	20	7.0151663E-4	45.0	1
TCGCGGG	20	7.0151663E-4	45.0	3
TATGGGA	75	0.0	42.0	4