SRR3551141_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551141_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	201051
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	670	0.33324877767332667	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	355	0.1765721135433298	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	339	0.16861393377799663	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCG	324	0.1611531402479968	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGC	319	0.15866620907133017	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	216	0.10743542683199785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGGGC	30	2.156541E-6	45.000004	4
ATAGGAT	25	3.879293E-5	45.0	5
AGGAACG	25	3.879293E-5	45.0	7
AACGGGA	25	3.879293E-5	45.0	4
CCCCATT	55	1.8189894E-12	45.0	42
GTATCCT	20	7.019393E-4	45.0	12
GTAAGGC	20	7.019393E-4	45.0	4
GTAAGCA	20	7.019393E-4	45.0	1
GCGCTTT	20	7.019393E-4	45.0	40
GATTCAT	55	1.8189894E-12	45.0	45
TAAACCA	65	0.0	41.53846	31
ACGGGAG	65	0.0	41.53846	5
CGAATAT	65	0.0	41.53846	14
CTCGTCC	60	3.6379788E-12	41.250004	37
AGGCGAT	60	3.6379788E-12	41.250004	7
TGATTCA	60	3.6379788E-12	41.250004	44
TAGGGCG	55	6.002665E-11	40.909092	5
TGCCAAT	50	1.0713848E-9	40.5	14
TAATGGC	50	1.0713848E-9	40.5	43
GGTATGC	45	1.9146682E-8	40.0	8