SRR3551140_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551140_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471419
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	637	0.13512395554697626	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	626	0.1327905748389437	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	513	0.10882039120188199	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	502	0.10648701049384941	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	20	7.0290465E-4	45.000004	26
TTGTGCG	20	7.0290465E-4	45.000004	1
TAGCGTA	20	7.0290465E-4	45.000004	1
TGGCGTG	20	7.0290465E-4	45.000004	23
GATTTCG	20	7.0290465E-4	45.000004	36
TATTGCG	20	7.0290465E-4	45.000004	1
CTCGGAA	20	7.0290465E-4	45.000004	18
AGACACG	20	7.0290465E-4	45.000004	24
TACTCGA	40	6.8012014E-9	45.000004	44
CGGAGTT	20	7.0290465E-4	45.000004	31
ACGACCA	20	7.0290465E-4	45.000004	28
ATTTCGA	20	7.0290465E-4	45.000004	37
AGTACGG	60	0.0	44.999996	2
TACGGGA	145	0.0	41.89655	4
TAGACGG	70	0.0	41.785717	2
ACGGGCT	50	1.0786607E-9	40.5	5
TTACTCG	45	1.924127E-8	40.0	43
CTACGGG	40	3.452442E-7	39.375004	3
CGTTCAA	35	6.240449E-6	38.57143	9
GCCGATG	35	6.240449E-6	38.57143	9