##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551140_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 471419 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95663518016881 31.0 31.0 34.0 30.0 34.0 2 32.08858573795286 33.0 31.0 34.0 30.0 34.0 3 32.029941516994434 33.0 31.0 34.0 30.0 34.0 4 35.752124967385704 37.0 35.0 37.0 35.0 37.0 5 31.186937734796434 37.0 35.0 37.0 0.0 37.0 6 33.411892605092284 37.0 35.0 37.0 17.0 37.0 7 29.48575895328784 35.0 32.0 37.0 0.0 37.0 8 32.556848578440835 35.0 33.0 37.0 17.0 37.0 9 36.420144287777966 39.0 35.0 39.0 32.0 39.0 10 36.81431592702034 38.0 35.0 39.0 33.0 39.0 11 36.9730536953326 39.0 37.0 39.0 33.0 39.0 12 36.96626143621704 39.0 37.0 39.0 33.0 39.0 13 36.77008139256161 39.0 35.0 39.0 33.0 39.0 14 38.045783050746785 40.0 37.0 41.0 33.0 41.0 15 38.15196035798303 40.0 37.0 41.0 33.0 41.0 16 38.2058572098282 40.0 37.0 41.0 34.0 41.0 17 38.15112882594889 40.0 37.0 41.0 33.0 41.0 18 38.0664483187992 40.0 37.0 41.0 33.0 41.0 19 38.01157356831184 40.0 37.0 41.0 33.0 41.0 20 37.940420305503174 40.0 36.0 41.0 33.0 41.0 21 37.85225881858813 40.0 36.0 41.0 33.0 41.0 22 37.7997004787673 40.0 36.0 41.0 33.0 41.0 23 37.75648202554415 40.0 36.0 41.0 33.0 41.0 24 37.72684384804176 40.0 36.0 41.0 33.0 41.0 25 37.59740697765682 40.0 36.0 41.0 33.0 41.0 26 37.42676472522321 39.0 36.0 41.0 32.0 41.0 27 37.373864863316925 39.0 36.0 41.0 32.0 41.0 28 37.1643845496257 39.0 35.0 41.0 32.0 41.0 29 37.0957534592369 39.0 35.0 41.0 31.0 41.0 30 36.98659578845995 39.0 35.0 41.0 31.0 41.0 31 36.907638427810504 39.0 35.0 41.0 31.0 41.0 32 36.842590137436126 39.0 35.0 41.0 31.0 41.0 33 36.70202728358424 39.0 35.0 41.0 30.0 41.0 34 36.56905428079904 39.0 35.0 41.0 30.0 41.0 35 36.48196614900969 39.0 35.0 41.0 30.0 41.0 36 36.35085985079091 39.0 35.0 41.0 30.0 41.0 37 36.27400465403389 39.0 35.0 40.0 30.0 41.0 38 36.15655287546747 39.0 35.0 40.0 29.0 41.0 39 36.1454332557661 39.0 35.0 40.0 29.0 41.0 40 35.9817317503113 39.0 35.0 40.0 29.0 41.0 41 35.84845116552366 38.0 35.0 40.0 28.0 41.0 42 35.807298814854725 38.0 35.0 40.0 28.0 41.0 43 35.622717794573404 38.0 35.0 40.0 27.0 41.0 44 35.47112653499329 38.0 34.0 40.0 27.0 41.0 45 35.373928500972596 38.0 34.0 40.0 26.0 41.0 46 35.24020033134006 38.0 34.0 40.0 26.0 41.0 47 35.10136205795693 38.0 34.0 40.0 25.0 41.0 48 34.975476168758576 38.0 34.0 40.0 24.0 41.0 49 34.76019210086993 38.0 34.0 40.0 24.0 41.0 50 34.60451530379556 37.0 34.0 40.0 24.0 41.0 51 32.531868677333755 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 9.0 9 24.0 10 23.0 11 20.0 12 13.0 13 14.0 14 21.0 15 31.0 16 78.0 17 123.0 18 254.0 19 453.0 20 867.0 21 1366.0 22 1865.0 23 2397.0 24 3168.0 25 3840.0 26 4734.0 27 5689.0 28 6581.0 29 7967.0 30 9657.0 31 12769.0 32 16275.0 33 23329.0 34 33749.0 35 40638.0 36 46703.0 37 72168.0 38 90066.0 39 86513.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.0918545921993 20.95863764506734 25.59888337126845 11.350624391464919 2 31.473275366499863 25.161056300233973 25.524003063092493 17.841665270173667 3 32.05068102897847 25.18629923698451 25.99810359786093 16.764916136176097 4 28.785645041884184 26.6066917116196 25.685854834022386 18.92180841247383 5 22.715461192696942 39.76865590907452 20.344534267816954 17.171348630411586 6 25.683097202276535 35.672087887844995 24.170854377952523 14.47396053192595 7 69.44310687520019 20.00280005684964 6.235641753938641 4.318451314011527 8 83.11629357323315 6.050031924890596 6.946474367812923 3.887200134063328 9 76.63140433457285 8.615477950612936 8.923696329592145 5.829421385222064 10 40.887618021335584 29.22050235565389 15.883534605096528 14.008345017914001 11 31.447396053192595 27.02882149425458 23.673632161622677 17.85015029093015 12 30.469709536526953 23.32765544027712 27.251765414631144 18.95086960856478 13 25.176117212076733 25.357696656265443 27.530922597519403 21.93526353413842 14 19.610367846862346 29.114015345160038 27.94287035524661 23.33274645273101 15 19.203723227107943 27.38498024050791 32.57972207314512 20.83157445923902 16 22.590943513095567 26.383959916761945 30.701350603178913 20.32374596696357 17 22.601761914560083 25.618398919008357 27.566771810215542 24.21306735621602 18 23.466597655164513 27.62340932376506 27.161612069093522 21.748380951976902 19 25.472668687515775 27.722684066615898 25.688400340249334 21.116246905618993 20 27.040912648832567 26.9412136549439 26.493416684520565 19.524457011702964 21 26.35108046133058 27.33619137115814 25.766250405690055 20.546477761821226 22 23.75169435258231 26.592691427371406 26.27895778490048 23.376656435145804 23 23.756785365036198 27.60792416088448 26.137045812748323 22.498244661331 24 23.02155831648703 25.389727609621165 28.01626578479018 23.572448289101626 25 22.118964233516255 27.34022175601747 26.33771655363912 24.203097456827155 26 22.199571930702835 29.165561846255667 26.01910402423322 22.61576219880828 27 23.26953304809522 28.346545217736242 26.24565407843129 22.138267655737252 28 21.664591372006644 28.903798955918198 27.505255409731046 21.926354262344113 29 21.936960538289718 26.851272434925193 28.680218658984895 22.531548367800195 30 22.9012831472639 27.209128185329824 27.76723042558743 22.122358241818848 31 23.581569686414845 28.42609228732826 25.36003003697348 22.63230798928342 32 24.441314414565387 28.108540385516918 25.787250832062348 21.662894367855348 33 24.376404005778298 28.55060996692963 24.97056758425095 22.102418443041117 34 22.108357957570654 27.67538007589851 26.803968444207804 23.41229352232303 35 23.333170703768836 26.34153481297954 26.828575004401607 23.496719478850025 36 23.289472846872954 29.011982970563345 26.283200295278725 21.415343887284983 37 23.085832348717382 29.945547379295277 25.928526427657772 21.040093844329565 38 22.498668912368828 28.43160755081997 25.63006582254852 23.439657714262683 39 23.946849829981396 27.16182419461244 25.757977510452484 23.13334846495368 40 23.97378977088323 25.884828570761893 28.23708844997762 21.90429320837726 41 20.920030800625348 27.011639327222703 28.456001985494854 23.61232788665709 42 23.761452126452266 26.4060209707288 26.948213797068 22.884313105750934 43 23.81978664415308 26.309715985142727 27.160339315980053 22.710158054724143 44 22.76170455581977 27.347646149179393 26.37420214289199 23.516447152108846 45 21.56298324844777 27.159915064942226 26.040528701643336 25.236572984966664 46 21.70044058470278 28.993952301455817 25.9800729287534 23.325534185088 47 22.16181358833649 27.44734514306806 27.077186112566526 23.313655156028926 48 22.16138933729867 25.179511220379325 28.468729516629583 24.19036992569243 49 21.236309949323214 26.766634352879286 27.8758386912704 24.1212170065271 50 20.515507436060066 25.82182729164501 28.396818965718396 25.265846306576528 51 20.809513405272167 25.79361459762971 27.250916912555496 26.145955084542628 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 227.0 1 556.0 2 885.0 3 1389.0 4 1893.0 5 1492.5 6 1092.0 7 915.5 8 739.0 9 757.0 10 775.0 11 821.5 12 868.0 13 902.0 14 936.0 15 999.5 16 1063.0 17 1020.0 18 977.0 19 1081.0 20 1185.0 21 1250.0 22 1315.0 23 1674.5 24 2034.0 25 2734.5 26 4434.0 27 5433.0 28 6091.5 29 6750.0 30 8218.5 31 9687.0 32 11183.0 33 12679.0 34 14031.0 35 15383.0 36 15989.0 37 16595.0 38 17876.0 39 19157.0 40 22043.5 41 24930.0 42 26741.5 43 28553.0 44 30933.5 45 33314.0 46 35836.0 47 38358.0 48 37081.0 49 35804.0 50 34316.5 51 32829.0 52 29943.0 53 27057.0 54 25543.5 55 24030.0 56 23450.0 57 22870.0 58 23107.5 59 23345.0 60 22606.5 61 21868.0 62 19826.0 63 17784.0 64 14811.5 65 11839.0 66 10029.5 67 8220.0 68 7207.0 69 6194.0 70 5156.0 71 4118.0 72 3375.5 73 2633.0 74 2305.0 75 1577.0 76 1177.0 77 878.0 78 579.0 79 480.0 80 381.0 81 283.5 82 186.0 83 152.0 84 118.0 85 83.0 86 48.0 87 44.5 88 41.0 89 32.0 90 23.0 91 19.0 92 15.0 93 16.0 94 17.0 95 9.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 471419.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.02502778856641 #Duplication Level Percentage of deduplicated Percentage of total 1 72.71271538579771 25.467648769696854 2 8.432530828668172 5.906992532040913 3 4.063953386514188 4.270202408822941 4 2.663851908553239 3.7320594848681146 5 1.8978698867393495 3.3236472761064553 6 1.3955841154358126 2.932822345465272 7 1.0569474597028858 2.5913729903003784 8 0.8285680670903701 2.3216495659647176 9 0.6709908835087817 2.1151326906692827 >10 6.1654989370441085 43.293195983209955 >50 0.08497280472052365 1.920793695329063 >100 0.02410576020440387 1.6436506050030122 >500 0.0024105760204403874 0.4808316525230335 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 637 0.13512395554697626 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 626 0.1327905748389437 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 513 0.10882039120188199 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 502 0.10648701049384941 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06321340463579109 0.0 2 0.0 0.0 0.0 0.2948544712877504 0.0 3 0.0 0.0 0.0 0.41746302121891565 0.0 4 0.0 0.0 0.0 0.6015879716345756 0.0 5 0.0 0.0 0.0 1.1671146050541026 0.0 6 0.0 0.0 0.0 1.553819426030771 0.0 7 0.0 0.0 0.0 1.9125236785110487 0.0 8 0.0 0.0 0.0 2.555476126333474 0.0 9 0.0 0.0 0.0 2.8499063465834005 0.0 10 0.0 0.0 0.0 3.5509811865877277 0.0 11 0.0 0.0 0.0 4.292784126223169 0.0 12 0.0 0.0 0.0 4.96628264876893 0.0 13 0.0 0.0 0.0 5.307380483179507 0.0 14 0.0 0.0 0.0 5.468383752033754 0.0 15 0.0 0.0 0.0 5.67796376471886 0.0 16 0.0 0.0 0.0 6.078880995462635 0.0 17 0.0 0.0 0.0 6.541102501171993 0.0 18 0.0 0.0 0.0 7.088598465483996 0.0 19 0.0 0.0 0.0 7.38175593262045 0.0 20 0.0 0.0 0.0 7.698247206837229 0.0 21 0.0 0.0 0.0 8.058860588987717 0.0 22 0.0 0.0 0.0 8.461899074920613 0.0 23 0.0 0.0 0.0 8.860270799437442 0.0 24 0.0 0.0 0.0 9.185247094410705 0.0 25 0.0 0.0 0.0 9.480950067774103 0.0 26 0.0 0.0 0.0 9.734227937355092 0.0 27 0.0 0.0 0.0 10.004263722930132 0.0 28 0.0 0.0 0.0 10.283633031337303 0.0 29 0.0 0.0 0.0 10.570850983944219 0.0 30 0.0 0.0 0.0 10.9278582322732 0.0 31 0.0 0.0 0.0 11.228015841533752 0.0 32 0.0 0.0 0.0 11.540264605372291 0.0 33 0.0 0.0 0.0 11.837240331849161 0.0 34 0.0 0.0 0.0 12.15564073573615 0.0 35 0.0 0.0 0.0 12.478920026558114 0.0 36 0.0 0.0 0.0 12.814078346439155 0.0 37 2.1212551891205064E-4 0.0 0.0 13.15390342773626 0.0 38 2.1212551891205064E-4 0.0 0.0 13.482485856531026 0.0 39 2.1212551891205064E-4 0.0 0.0 13.825917071649636 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAC 20 7.0290465E-4 45.000004 26 TTGTGCG 20 7.0290465E-4 45.000004 1 TAGCGTA 20 7.0290465E-4 45.000004 1 TGGCGTG 20 7.0290465E-4 45.000004 23 GATTTCG 20 7.0290465E-4 45.000004 36 TATTGCG 20 7.0290465E-4 45.000004 1 CTCGGAA 20 7.0290465E-4 45.000004 18 AGACACG 20 7.0290465E-4 45.000004 24 TACTCGA 40 6.8012014E-9 45.000004 44 CGGAGTT 20 7.0290465E-4 45.000004 31 ACGACCA 20 7.0290465E-4 45.000004 28 ATTTCGA 20 7.0290465E-4 45.000004 37 AGTACGG 60 0.0 44.999996 2 TACGGGA 145 0.0 41.89655 4 TAGACGG 70 0.0 41.785717 2 ACGGGCT 50 1.0786607E-9 40.5 5 TTACTCG 45 1.924127E-8 40.0 43 CTACGGG 40 3.452442E-7 39.375004 3 CGTTCAA 35 6.240449E-6 38.57143 9 GCCGATG 35 6.240449E-6 38.57143 9 >>END_MODULE