SRR3551136_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551136_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	664560
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3970	0.5973877452750692	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1233	0.1855362946912243	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	775	0.11661851450583845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAAG	20	7.0311356E-4	45.000004	2
TACTCGA	20	7.0311356E-4	45.000004	44
GTTAACG	25	3.889024E-5	45.0	1
TGCTACG	25	3.889024E-5	45.0	1
ACGTAAG	35	1.2109012E-7	45.0	1
AATAGCG	35	1.2109012E-7	45.0	1
CGTTATT	375	0.0	42.6	1
CGTTTTT	1800	0.0	42.000004	1
ATTACGG	50	1.0804797E-9	40.5	2
TCTCGTA	50	1.0804797E-9	40.5	28
TACGGTT	45	1.9261279E-8	40.000004	33
TCGTACG	45	1.9261279E-8	40.000004	30
CGACGGT	40	3.4552795E-7	39.375004	28
ACGCACG	40	3.4552795E-7	39.375004	1
TTAACGG	75	0.0	39.0	2
TAACGTG	35	6.2443123E-6	38.571426	44
CTAACGT	35	6.2443123E-6	38.571426	43
TTACGCG	35	6.2443123E-6	38.571426	1
CGGTTTT	570	0.0	38.289474	1
TAGACGG	90	0.0	37.500004	2