SRR3551133_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551133_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592914
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3929	0.6626593401403914	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC	2315	0.39044448267370985	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG	2066	0.348448510239259	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC	1728	0.291441929183659	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1258	0.21217242298208508	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	765	0.12902377073234905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTT	20	7.03052E-4	45.0	27
ACCGAGC	20	7.03052E-4	45.0	17
ATTCCCG	20	7.03052E-4	45.0	30
TCGCTAA	20	7.03052E-4	45.0	12
CCGGTGA	20	7.03052E-4	45.0	43
TCGACGT	20	7.03052E-4	45.0	26
TGTAACG	25	3.8885126E-5	45.0	1
CACCCGT	20	7.03052E-4	45.0	16
GCATACG	20	7.03052E-4	45.0	1
CGGTTTT	640	0.0	42.890625	1
CGTTATT	470	0.0	42.606384	1
CGTTTTA	180	0.0	42.500004	1
CGTTTTT	2060	0.0	42.160194	1
CGAATAT	75	0.0	42.0	14
GTAACGG	60	3.6379788E-12	41.250004	2
TACGGCT	280	0.0	40.98214	7
CGGTTTA	55	6.002665E-11	40.909092	1
TGCACGG	90	0.0	40.000004	2
CTACGAA	80	0.0	39.375	11
ATAGGCG	35	6.2431736E-6	38.571426	5