SRR3551132_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551132_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	390510
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	727	0.1861668075081304	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	671	0.17182658574684387	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	592	0.1515966300478861	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG	514	0.13162274973752272	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	494	0.12650124196563467	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC	446	0.11420962331310337	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTA	20	7.027559E-4	45.000004	39
CAACGTG	20	7.027559E-4	45.000004	18
CAGCACG	20	7.027559E-4	45.000004	1
AACGGGC	40	6.7957444E-9	45.000004	4
GTCGTTT	20	7.027559E-4	45.000004	9
GCTAGCG	20	7.027559E-4	45.000004	1
CTTTCGT	20	7.027559E-4	45.000004	15
CAATGCG	20	7.027559E-4	45.000004	1
CCAACGG	20	7.027559E-4	45.000004	2
TTCGCAG	20	7.027559E-4	45.000004	1
TCGAATA	20	7.027559E-4	45.000004	14
TGACTAC	20	7.027559E-4	45.000004	4
TCGTTCC	25	3.886059E-5	45.0	38
CGTTCCA	25	3.886059E-5	45.0	39
TTGCGGA	25	3.886059E-5	45.0	1
GCTAGTA	25	3.886059E-5	45.0	12
TCCGAAC	30	2.161807E-6	44.999996	35
CGTTGAT	65	0.0	41.53846	25
ACGGGTC	55	6.002665E-11	40.909092	5
CGGGGTA	55	6.002665E-11	40.909092	6