SRR3551131_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551131_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	613941
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2523	0.410951540946117	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCG	1475	0.24025109904697683	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC	1148	0.18698865200401993	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	1078	0.17558690493060408	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	798	0.1299799166369407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	25	3.888674E-5	45.000004	1
TTAAACG	25	3.888674E-5	45.000004	1
ATACGCA	25	3.888674E-5	45.000004	17
TAGCGAA	20	7.0307154E-4	45.0	1
GACTTCG	20	7.0307154E-4	45.0	41
TTGCGTC	20	7.0307154E-4	45.0	43
CGATGTA	40	6.8066583E-9	45.0	10
ATGTTCG	20	7.0307154E-4	45.0	38
AATACCG	20	7.0307154E-4	45.0	1
TGATTCG	30	2.1638443E-6	44.999996	15
TAATCGT	30	2.1638443E-6	44.999996	21
CGGCGCA	60	3.6379788E-12	41.249996	22
CTACGGG	105	0.0	40.714287	3
CGTTTTA	145	0.0	40.344826	1
TTTGACG	45	1.925764E-8	40.000004	1
TAGTACG	45	1.925764E-8	40.000004	1
CGTTTTT	1035	0.0	39.56522	1
GGTACTC	40	3.4547156E-7	39.375	9
TTTCGTC	40	3.4547156E-7	39.375	16
CCCCGAT	40	3.4547156E-7	39.375	40