##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551131_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 613941 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.810032234367796 31.0 31.0 34.0 30.0 34.0 2 31.936697500248396 33.0 31.0 34.0 30.0 34.0 3 31.764909005914248 33.0 31.0 34.0 30.0 34.0 4 35.55771157163311 37.0 35.0 37.0 33.0 37.0 5 31.14863969013309 37.0 35.0 37.0 0.0 37.0 6 33.359251133252215 37.0 35.0 37.0 17.0 37.0 7 29.575946222845516 35.0 32.0 37.0 0.0 37.0 8 32.61131607108826 35.0 33.0 37.0 17.0 37.0 9 36.458736262930806 39.0 35.0 39.0 32.0 39.0 10 36.780550574077964 38.0 35.0 39.0 33.0 39.0 11 36.935184325529654 39.0 37.0 39.0 33.0 39.0 12 37.01777043722442 39.0 37.0 39.0 33.0 39.0 13 36.87516064247216 39.0 37.0 39.0 33.0 39.0 14 38.13520028797556 40.0 37.0 41.0 33.0 41.0 15 38.19863960869204 40.0 37.0 41.0 33.0 41.0 16 38.24002306410551 40.0 37.0 41.0 33.0 41.0 17 38.17131287859908 40.0 37.0 41.0 33.0 41.0 18 38.07794397181488 40.0 37.0 41.0 33.0 41.0 19 37.969480780726485 40.0 37.0 41.0 33.0 41.0 20 37.889528472605676 40.0 36.0 41.0 33.0 41.0 21 37.81462388079636 40.0 36.0 41.0 33.0 41.0 22 37.80394044378857 40.0 36.0 41.0 33.0 41.0 23 37.76495298408153 40.0 36.0 41.0 33.0 41.0 24 37.710589454035485 40.0 36.0 41.0 33.0 41.0 25 37.580804995919806 39.0 36.0 41.0 33.0 41.0 26 37.43049250660894 39.0 36.0 41.0 33.0 41.0 27 37.391653269613855 39.0 36.0 41.0 32.0 41.0 28 37.315988018392645 39.0 36.0 41.0 32.0 41.0 29 37.2495256058807 39.0 36.0 41.0 32.0 41.0 30 37.12481003874965 39.0 35.0 41.0 32.0 41.0 31 37.008051262254845 39.0 35.0 41.0 31.0 41.0 32 36.83902361953347 39.0 35.0 41.0 31.0 41.0 33 36.661627094460215 39.0 35.0 41.0 30.0 41.0 34 36.404266859519076 39.0 35.0 41.0 30.0 41.0 35 36.27409148436087 39.0 35.0 41.0 30.0 41.0 36 36.054456372843646 39.0 35.0 40.0 29.0 41.0 37 35.92399595400861 39.0 35.0 40.0 28.0 41.0 38 35.787966596138716 39.0 35.0 40.0 27.0 41.0 39 35.65010318581101 39.0 35.0 40.0 26.0 41.0 40 35.53225961452322 38.0 35.0 40.0 26.0 41.0 41 35.29830553750279 38.0 34.0 40.0 25.0 41.0 42 35.278301986672986 38.0 34.0 40.0 25.0 41.0 43 35.074402914938084 38.0 34.0 40.0 24.0 41.0 44 34.94995610327377 38.0 34.0 40.0 24.0 41.0 45 34.80435905078827 38.0 34.0 40.0 23.0 41.0 46 34.62014428096511 38.0 34.0 40.0 23.0 41.0 47 34.442045734036334 38.0 33.0 40.0 22.0 41.0 48 34.32550521955693 38.0 33.0 40.0 22.0 41.0 49 34.126530073736724 38.0 33.0 40.0 21.0 41.0 50 33.95863283279664 37.0 33.0 40.0 20.0 41.0 51 31.804482841185067 35.0 29.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 9.0 9 19.0 10 29.0 11 24.0 12 21.0 13 14.0 14 25.0 15 29.0 16 61.0 17 109.0 18 228.0 19 455.0 20 796.0 21 1306.0 22 2092.0 23 3274.0 24 4647.0 25 6570.0 26 8522.0 27 9808.0 28 10893.0 29 12349.0 30 14460.0 31 17590.0 32 22366.0 33 30477.0 34 41912.0 35 50303.0 36 59383.0 37 91574.0 38 114165.0 39 110413.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.802033094385294 21.665762671005844 25.647741395345808 12.884462839263055 2 31.260984361689477 25.92366367452247 26.00233572932904 16.81301623445901 3 30.94059526892649 25.191508630308125 28.203361560801444 15.664534539963936 4 27.217273321052023 25.234672387086054 29.43996247196392 18.108091819898004 5 21.683028173717016 38.92377280553017 22.710651349233885 16.682547671518925 6 24.444694196999386 34.947006308423774 26.181994686785863 14.426304807790977 7 68.32496933744447 18.88617961660811 8.63226270928314 4.156588336664272 8 82.108867138699 5.104399282667227 8.892059660455972 3.8946739181778054 9 75.70401716125816 7.557892370765269 10.348225643832224 6.38986482414434 10 37.37818454867813 31.839541584614807 17.621400101964195 13.160873764742867 11 27.23551611636949 25.45505186980508 29.192381678369745 18.117050335455687 12 27.214015679031046 22.52692033925084 31.208536325151766 19.05052765656635 13 22.868646987251218 24.22854964890763 32.391223260867086 20.511580102974065 14 18.51220231260007 28.41299082485125 30.93131098916671 22.14349587338197 15 18.2442612563748 27.33194232019038 35.30306658131644 19.12072984211838 16 21.461182752088558 26.654841426130528 32.213681770723895 19.670294051057024 17 20.617616350756833 26.603044917997003 30.49055202372866 22.288786707517495 18 21.154149991611572 28.208248023832912 29.951249387156093 20.686352597399424 19 22.351659198522334 28.442309603040034 28.83013188563722 20.375899312800417 20 23.747558804510533 28.127621383813757 29.44761793071321 18.677201880962503 21 22.660646544211904 28.57668733640529 29.551373829081296 19.21129229030151 22 21.625693674147843 25.68927633111325 29.06565940375378 23.619370590985127 23 21.77896573123476 27.426902585101825 30.094585636079035 20.699546047584377 24 21.712835598208947 25.411399466724 30.514169928380742 22.36159500668631 25 20.83082902102971 28.8597764280281 28.139837541392414 22.169557009549777 26 20.00941458544062 28.74592183939499 28.879485162255 22.365178412909383 27 20.943217670753377 28.798044111730608 29.21469652621343 21.044041691302585 28 18.92429402825353 28.114753697830896 30.673631505307515 22.28732076860806 29 20.22621066193657 25.66989336108844 31.729270402204772 22.374625574770214 30 20.522167439542237 26.276792069596265 30.17912144652336 23.021919044338137 31 21.80323516429103 26.758597324498606 27.609982066680676 23.828185444529687 32 22.366481469717776 27.153749301642993 29.04253014540485 21.43723908323438 33 21.144539947649694 26.27288289917109 29.956950260692807 22.625626892486412 34 20.90640631591635 25.983604287708427 30.951019723393614 22.158969672981605 35 21.58920808351291 24.566692890684934 30.219679089684515 23.62441993611764 36 21.060981429811658 26.78237811125173 30.017705284384004 22.138935174552604 37 21.641167473747476 26.77065059997622 30.403572981768605 21.184608944507698 38 20.448870494070277 26.691978545169647 29.957276024894902 22.901874935865173 39 22.73019720135974 24.667191147032046 31.213585670284278 21.38902598132394 40 23.2641247285977 24.62663350387089 31.737251625156166 20.371990142375246 41 20.805256531165046 26.319304297970003 30.556682156754476 22.318757014110478 42 21.419159170017966 25.709310829542254 30.00174283848122 22.86978716195856 43 21.39114344863757 25.578679384501118 30.046209652067546 22.983967514793765 44 21.37094606810752 25.748076769591865 29.337509630404224 23.543467531896386 45 21.417530349007478 24.848478925499357 29.238965959269702 24.495024766223462 46 21.6245534994405 26.795082915133538 28.59704759903639 22.98331598638957 47 21.401893667306794 24.931060150731096 31.4950459408966 22.172000241065508 48 21.084599334463736 24.314551398261397 30.742367751950106 23.858481515324762 49 20.038896245730452 24.391757514158527 32.03825774789434 23.53108849221668 50 19.148908445599822 24.38605664062182 32.03809486579329 24.426940047985067 51 19.78708051750901 24.12446798633745 30.167882581550998 25.920568914602544 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 169.0 1 535.5 2 902.0 3 3350.5 4 5799.0 5 4530.0 6 3261.0 7 2669.0 8 2077.0 9 1976.5 10 1876.0 11 1871.5 12 1867.0 13 1789.5 14 1712.0 15 1762.5 16 1813.0 17 1776.0 18 1739.0 19 2031.5 20 2324.0 21 2578.0 22 2832.0 23 3140.0 24 3448.0 25 4356.5 26 6648.5 27 8032.0 28 9701.5 29 11371.0 30 13073.5 31 14776.0 32 16597.5 33 18419.0 34 19993.0 35 21567.0 36 23092.5 37 24618.0 38 26021.5 39 27425.0 40 30019.5 41 32614.0 42 35240.0 43 37866.0 44 42136.0 45 46406.0 46 52096.5 47 57787.0 48 55523.5 49 53260.0 50 49913.0 51 46566.0 52 40938.5 53 35311.0 54 31161.5 55 27012.0 56 25514.0 57 24016.0 58 23451.0 59 22886.0 60 22204.0 61 21522.0 62 19184.0 63 16846.0 64 13685.5 65 10525.0 66 8734.5 67 6944.0 68 5856.5 69 4769.0 70 3904.0 71 3039.0 72 2572.5 73 2106.0 74 1781.5 75 1078.5 76 700.0 77 540.5 78 381.0 79 313.5 80 246.0 81 214.5 82 183.0 83 130.5 84 78.0 85 67.5 86 57.0 87 47.0 88 37.0 89 24.0 90 11.0 91 10.5 92 10.0 93 8.0 94 6.0 95 5.0 96 4.0 97 4.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 613941.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.756215249698094 #Duplication Level Percentage of deduplicated Percentage of total 1 76.96038758953378 32.13574509888766 2 8.343268157922333 6.967666021763142 3 3.4101569035682138 4.271857371019148 4 2.081570398403559 3.4767400645255533 5 1.441487826524514 3.0095537982088536 6 1.0523956378199257 2.6366435268391286 7 0.8341146599023267 2.438062989726719 8 0.6679842465508298 2.2313995185907083 9 0.5411642660895822 2.0337274422253344 >10 4.59286237440476 36.446719562420675 >50 0.05484691755268631 1.4835778901960912 >100 0.017341304781230537 1.600950622038386 >500 8.065723154060717E-4 0.21925294097969694 >1k 0.0016131446308121434 1.0481031525788278 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2523 0.410951540946117 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCG 1475 0.24025109904697683 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC 1148 0.18698865200401993 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC 1078 0.17558690493060408 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 798 0.1299799166369407 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12639651041386712 0.0 2 0.0 0.0 0.0 0.5130786183037133 0.0 3 0.0 0.0 0.0 0.7490947827234213 0.0 4 0.0 0.0 0.0 1.0691581112843092 0.0 5 0.0 0.0 0.0 2.149555087540985 0.0 6 0.0 0.0 0.0 2.8431070738067663 0.0 7 0.0 0.0 0.0 3.50522281457013 0.0 8 0.0 0.0 0.0 4.586271319231001 0.0 9 0.0 0.0 0.0 5.0604211153840515 0.0 10 0.0 0.0 0.0 6.406967444754463 0.0 11 0.0 0.0 0.0 7.546979269994999 0.0 12 0.0 0.0 0.0 8.691063147761756 0.0 13 0.0 0.0 0.0 9.102177570808921 0.0 14 0.0 0.0 0.0 9.291120808025527 0.0 15 0.0 0.0 0.0 9.57258107863785 0.0 16 0.0 0.0 0.0 10.100807732339101 0.0 17 0.0 0.0 0.0 10.761131769990927 0.0 18 0.0 0.0 0.0 11.47471825468571 0.0 19 0.0 0.0 0.0 11.928182024005563 0.0 20 0.0 0.0 0.0 12.36372876221005 0.0 21 0.0 0.0 0.0 12.910361093329815 0.0 22 0.0 0.0 0.0 13.522634911172247 0.0 23 0.0 0.0 0.0 14.160481218879339 0.0 24 0.0 0.0 0.0 14.629744552000925 0.0 25 0.0 0.0 0.0 15.03548386571348 0.0 26 0.0 0.0 0.0 15.415650689561375 0.0 27 0.0 0.0 0.0 15.82008694646554 0.0 28 0.0 0.0 0.0 16.23999700296934 0.0 29 0.0 0.0 0.0 16.667236754020337 0.0 30 0.0 0.0 0.0 17.150019301528975 0.0 31 0.0 0.0 0.0 17.58410010082402 0.0 32 0.0 0.0 0.0 18.020624131634797 0.0 33 0.0 0.0 0.0 18.427503620054697 0.0 34 0.0 0.0 0.0 18.818583544672858 0.0 35 0.0 0.0 0.0 19.247126352532245 0.0 36 0.0 0.0 0.0 19.682184444433585 0.0 37 0.0 0.0 0.0 20.111215898596118 0.0 38 0.0 0.0 0.0 20.547902811507946 0.0 39 1.6288210104879785E-4 0.0 0.0 21.021889725559948 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 25 3.888674E-5 45.000004 1 TTAAACG 25 3.888674E-5 45.000004 1 ATACGCA 25 3.888674E-5 45.000004 17 TAGCGAA 20 7.0307154E-4 45.0 1 GACTTCG 20 7.0307154E-4 45.0 41 TTGCGTC 20 7.0307154E-4 45.0 43 CGATGTA 40 6.8066583E-9 45.0 10 ATGTTCG 20 7.0307154E-4 45.0 38 AATACCG 20 7.0307154E-4 45.0 1 TGATTCG 30 2.1638443E-6 44.999996 15 TAATCGT 30 2.1638443E-6 44.999996 21 CGGCGCA 60 3.6379788E-12 41.249996 22 CTACGGG 105 0.0 40.714287 3 CGTTTTA 145 0.0 40.344826 1 TTTGACG 45 1.925764E-8 40.000004 1 TAGTACG 45 1.925764E-8 40.000004 1 CGTTTTT 1035 0.0 39.56522 1 GGTACTC 40 3.4547156E-7 39.375 9 TTTCGTC 40 3.4547156E-7 39.375 16 CCCCGAT 40 3.4547156E-7 39.375 40 >>END_MODULE