SRR3551127_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551127_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428126
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	718	0.16770763747121176	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	565	0.13197049466745772	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	489	0.11421871131395897	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	441	0.10300705866964398	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	439	0.10253990647613084	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	435	0.1016056020891046	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	30	2.1622982E-6	45.000004	31
TCGTTGA	45	3.8380676E-10	45.0	24
GTCGATA	20	7.0283207E-4	45.0	43
TTTACGG	55	1.8189894E-12	45.0	2
AGATACG	25	3.8866907E-5	45.0	1
TAGAACG	25	3.8866907E-5	45.0	1
CGTTGAT	45	3.8380676E-10	45.0	25
GCACGCT	20	7.0283207E-4	45.0	17
TACGCAA	20	7.0283207E-4	45.0	1
GTTAACG	25	3.8866907E-5	45.0	1
CGTAGCA	20	7.0283207E-4	45.0	14
CCTCATG	20	7.0283207E-4	45.0	28
TTAACGG	25	3.8866907E-5	45.0	2
GCAATTG	20	7.0283207E-4	45.0	1
CCAACGA	20	7.0283207E-4	45.0	17
CGATATC	25	3.8866907E-5	45.0	10
GTCGGTA	20	7.0283207E-4	45.0	23
TACGTAG	20	7.0283207E-4	45.0	1
GACTACG	20	7.0283207E-4	45.0	39
TCACGTC	25	3.8866907E-5	45.0	38