SRR3551124_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551124_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	239997
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCTTCTGC	259	0.10791801564186218	RNA PCR Primer, Index 16 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCTTCTGC	256	0.10666800001666688	RNA PCR Primer, Index 14 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCTTCTGCT	255	0.10625132814160176	RNA PCR Primer, Index 16 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	243	0.1012512656408205	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	240	0.1000012500156252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	25	3.881553E-5	45.0	5
CGTGGGC	25	3.881553E-5	45.0	24
CGGGTAC	20	7.0221216E-4	45.0	6
TCGTTCC	20	7.0221216E-4	45.0	24
TTAATCG	35	1.2065539E-7	45.0	20
TAGCGCC	20	7.0221216E-4	45.0	19
GCACGTG	20	7.0221216E-4	45.0	1
TTCGTTC	20	7.0221216E-4	45.0	23
GGTCAAT	20	7.0221216E-4	45.0	9
TACGGGC	45	3.8198777E-10	45.0	4
AAGCGCA	40	6.7757355E-9	45.0	42
ATCGTTG	35	1.2065539E-7	45.0	23
CGTTATT	20	7.0221216E-4	45.0	1
GCCGATT	25	3.881553E-5	45.0	9
TACGAAT	35	1.2065539E-7	45.0	12
TTGACGG	20	7.0221216E-4	45.0	2
GCGGGTC	25	3.881553E-5	45.0	5
CGAATTG	25	3.881553E-5	45.0	33
CGAATAT	35	1.2065539E-7	45.0	14
AGCGAAT	25	3.881553E-5	45.0	31