SRR3551120_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551120_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	243818
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	654	0.2682328622168995	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	412	0.16897850035682355	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	398	0.1632365124806208	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	353	0.14478012287854053	No Hit
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	331	0.1357569990730791	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	262	0.10745720168322272	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATGG	35	1.206663E-7	45.000004	2
GAGTCTC	35	1.206663E-7	45.000004	27
GTAATCC	35	1.206663E-7	45.000004	9
CACCTAT	35	1.206663E-7	45.000004	15
CGTGTCC	35	1.206663E-7	45.000004	33
CGCACGG	35	1.206663E-7	45.000004	2
TGTCCGT	35	1.206663E-7	45.000004	35
AACCGTC	20	7.022344E-4	45.0	25
ACGCCTA	20	7.022344E-4	45.0	12
TTAATAG	20	7.022344E-4	45.0	1
GCGAATC	25	3.881737E-5	45.0	1
TAGACGG	25	3.881737E-5	45.0	2
TCCGAGG	20	7.022344E-4	45.0	2
CGCATGG	50	2.1827873E-11	45.0	2
CGGCAGT	40	6.7775545E-9	45.0	12
TAGCGAG	20	7.022344E-4	45.0	1
GCTATCA	25	3.881737E-5	45.0	9
TTCGTGG	20	7.022344E-4	45.0	16
CGTCTGT	20	7.022344E-4	45.0	19
TTGTACC	20	7.022344E-4	45.0	22