SRR3551117_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551117_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	708773
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3304	0.46615771198959327	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	940	0.13262356212778986	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	899	0.12683891739668413	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.0314534E-4	45.000004	1
AATCCGG	20	7.0314534E-4	45.000004	2
CTAACGG	35	1.2110468E-7	45.000004	2
CTACGAA	125	0.0	41.399998	11
CGAATAT	125	0.0	41.399998	14
CGTTTTT	1150	0.0	41.282608	1
GCGATAT	55	6.002665E-11	40.909092	9
ACGCTAG	45	1.9264917E-8	40.0	1
TACGAAT	130	0.0	39.807693	12
ATGGGCG	125	0.0	39.6	5
CGTTATT	245	0.0	39.489796	1
TTACGGG	120	0.0	39.375004	3
CACGACC	195	0.0	38.076923	27
ATTACGG	30	1.1394803E-4	37.500004	2
TACTATC	30	1.1394803E-4	37.500004	40
TATAGCG	30	1.1394803E-4	37.500004	1
ACCCGTG	30	1.1394803E-4	37.500004	37
TATGGGA	475	0.0	37.42105	4
AAACACG	230	0.0	37.173912	40
ACGACCA	200	0.0	37.125	28