##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 708773 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.893906793853603 31.0 31.0 34.0 30.0 34.0 2 32.03096054731205 33.0 31.0 34.0 30.0 34.0 3 31.87808367418059 33.0 31.0 34.0 30.0 34.0 4 35.65808234794497 37.0 35.0 37.0 33.0 37.0 5 31.11079287726818 37.0 35.0 37.0 0.0 37.0 6 33.366685807726874 37.0 35.0 37.0 17.0 37.0 7 29.6365620586563 35.0 32.0 37.0 0.0 37.0 8 32.708084252645065 35.0 35.0 37.0 17.0 37.0 9 36.58979814411666 39.0 35.0 39.0 32.0 39.0 10 36.87434481843975 38.0 37.0 39.0 33.0 39.0 11 36.93437108919217 39.0 37.0 39.0 33.0 39.0 12 36.91216792964743 39.0 35.0 39.0 33.0 39.0 13 36.7277083071731 39.0 35.0 39.0 33.0 39.0 14 37.83133951208638 40.0 37.0 41.0 33.0 41.0 15 37.97923735808221 40.0 37.0 41.0 33.0 41.0 16 38.0634039389198 40.0 37.0 41.0 33.0 41.0 17 38.054306526913415 40.0 37.0 41.0 33.0 41.0 18 37.9620372107854 40.0 37.0 41.0 33.0 41.0 19 37.86081157154688 40.0 36.0 41.0 33.0 41.0 20 37.757861826000706 40.0 36.0 41.0 33.0 41.0 21 37.64959585085775 40.0 36.0 41.0 33.0 41.0 22 37.62295262375965 39.0 36.0 41.0 33.0 41.0 23 37.575175690947596 39.0 35.0 41.0 33.0 41.0 24 37.518775404819316 39.0 35.0 41.0 33.0 41.0 25 37.36513806253907 39.0 35.0 41.0 32.0 41.0 26 37.21318673256459 39.0 35.0 41.0 32.0 41.0 27 37.15968864502457 39.0 35.0 41.0 32.0 41.0 28 37.03944986617718 39.0 35.0 41.0 32.0 41.0 29 36.98710588580547 39.0 35.0 41.0 31.0 41.0 30 36.79355308399163 39.0 35.0 41.0 31.0 41.0 31 36.65397525018589 39.0 35.0 41.0 30.0 41.0 32 36.53333436798523 39.0 35.0 40.0 30.0 41.0 33 36.344666063746786 39.0 35.0 40.0 30.0 41.0 34 36.16958885284851 39.0 35.0 40.0 30.0 41.0 35 35.983652029634314 39.0 35.0 40.0 29.0 41.0 36 35.83204213478787 38.0 35.0 40.0 28.0 41.0 37 35.73342664012314 38.0 35.0 40.0 27.0 41.0 38 35.54175173151347 38.0 34.0 40.0 27.0 41.0 39 35.49635779015284 38.0 35.0 40.0 26.0 41.0 40 35.32801757403287 38.0 34.0 40.0 25.0 41.0 41 35.21195079383667 38.0 34.0 40.0 25.0 41.0 42 35.15102860859542 38.0 34.0 40.0 25.0 41.0 43 35.04070555735052 38.0 34.0 40.0 24.0 41.0 44 34.85607380642321 38.0 34.0 40.0 24.0 41.0 45 34.71448122318429 38.0 34.0 40.0 23.0 41.0 46 34.63496069968805 38.0 33.0 40.0 23.0 41.0 47 34.4548000558712 37.0 33.0 40.0 23.0 41.0 48 34.337256074935134 37.0 33.0 40.0 23.0 41.0 49 34.22574505518692 37.0 33.0 40.0 23.0 41.0 50 34.04396753262328 37.0 33.0 40.0 22.0 41.0 51 32.094985277373716 35.0 30.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 12.0 9 16.0 10 32.0 11 28.0 12 20.0 13 12.0 14 33.0 15 52.0 16 119.0 17 205.0 18 374.0 19 710.0 20 1182.0 21 1931.0 22 2793.0 23 4182.0 24 5936.0 25 7880.0 26 9817.0 27 11017.0 28 12081.0 29 13670.0 30 16136.0 31 20224.0 32 26249.0 33 36815.0 34 51918.0 35 60442.0 36 71032.0 37 108023.0 38 128471.0 39 117340.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.452340876416 20.468048303194394 25.538501043352387 12.541109777037217 2 33.34706598586571 24.13904028511244 24.623257375774756 17.890636353247093 3 33.06672234975091 23.64819201634374 27.08427098662054 16.200814647284815 4 28.77874862614688 25.758176454238523 26.550108426816482 18.912966492798116 5 21.728254321200158 39.192378942200115 22.67481972366329 16.40454701293644 6 27.533356942208577 34.22788396284847 24.805685318148406 13.433073776794547 7 72.56596964049137 18.309529285116675 6.26378262151634 2.860718452875603 8 87.53733564907242 3.5114204406770573 6.531004990314247 2.4202389199362844 9 81.73477262818984 6.181104528530291 8.311546856327766 3.772575986952099 10 43.83434470556864 29.82788565591522 14.622594257964117 11.715175380552024 11 30.70912689958562 24.931536613273924 26.858246575419777 17.501089911720676 12 28.28225680154295 22.669881612307467 30.513577689895072 18.534283896254514 13 25.439174460652424 23.45969725144722 32.01405809758555 19.08707019031481 14 21.40219788282003 25.064019086505834 31.895120158358175 21.63866287231596 15 20.2174744241104 25.716978496641378 33.83043654315274 20.235110536095476 16 26.145324384534963 24.912912879017682 29.76439565276894 19.177367083678412 17 25.3665136792739 24.21931986686852 28.233440043568255 22.18072641028933 18 25.990973132441557 23.8880431393408 29.470507482649595 20.650476245568044 19 24.85591296508191 26.2615816347406 27.34697851075027 21.53552688942722 20 26.281616257955648 27.08032049753588 27.47748573943985 19.16057750506862 21 26.996372604486908 25.60438955772864 29.066005618159835 18.33323221962462 22 25.90349801699557 23.297586110080378 29.41971548013257 21.379200392791486 23 23.84472884830545 24.9848682159168 29.950350817539608 21.22005211823814 24 24.059466147835767 24.49585410279455 30.363318015782205 21.08136173358748 25 23.719441908763457 26.435685332257297 28.420947186193608 21.423925572785645 26 23.26795744194545 26.711937390391565 27.139013478222225 22.881091689440765 27 23.138861102214673 26.207685676514203 29.48856686132231 21.164886359948813 28 21.03790635365625 26.83285057416126 29.32165869749553 22.80758437468696 29 23.501600653523766 26.079859136846352 28.485989167194575 21.932551042435307 30 24.160626886182175 25.683117161630026 29.002515615013554 21.15374033717424 31 25.469508573266758 25.18845949267255 27.981314186629568 21.360717747431124 32 25.66787956087492 25.281719252849644 27.53617872012619 21.514222466149246 33 25.49716199685936 25.233607939354346 27.103600165356184 22.165629898430105 34 22.46403291321763 26.19992578724077 29.80926192165898 21.526779377882622 35 22.95093069290168 26.711655212599805 28.98233990290262 21.3550741915959 36 25.52904808732838 26.84837035270813 27.01922900561957 20.603352554343914 37 23.368977091395976 27.602631590085963 27.202644570264383 21.82574674825367 38 23.512746676298335 26.457977377806436 28.018561655142054 22.010714290753175 39 23.295046509954528 26.14207933992971 27.373503223175828 23.189370926939937 40 25.61990933627551 25.26972669669979 28.032247278042476 21.078116688982227 41 21.859043727681502 25.016189950802303 28.690709155117368 24.434057166398834 42 23.179917970915934 25.360587945646913 28.23132371013004 23.228170373307112 43 23.012022184817987 25.508731286321574 28.097289259043446 23.381957269816994 44 23.30040788799799 24.81330411852596 27.92614842834024 23.960139565135805 45 23.281784153741746 24.866212454481197 27.112488765796666 24.73951462598039 46 23.439098272648646 25.569963867133765 27.45335953824426 23.537578321973328 47 21.93128124237238 25.88148814923819 29.48616835009234 22.701062258297085 48 22.132191830106397 26.150544673682546 29.371321988845512 22.345941507365545 49 23.250180241064488 25.46160759509744 28.940013234138434 22.348198929699635 50 22.28160497084398 25.884168838259924 28.721607623315222 23.112618567580874 51 22.449218579150166 24.992204838502595 27.833735201538435 24.724841380808808 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 290.0 1 790.0 2 1290.0 3 4031.5 4 6773.0 5 4994.0 6 3215.0 7 2560.0 8 1905.0 9 1855.0 10 1805.0 11 1775.5 12 1746.0 13 1737.0 14 1728.0 15 1804.0 16 1880.0 17 1895.5 18 1911.0 19 1990.5 20 2070.0 21 2146.5 22 2223.0 23 2852.0 24 3481.0 25 4413.0 26 6118.5 27 6892.0 28 8298.0 29 9704.0 30 11109.0 31 12514.0 32 14891.0 33 17268.0 34 19471.5 35 21675.0 36 22590.5 37 23506.0 38 25557.0 39 27608.0 40 30292.5 41 32977.0 42 35448.5 43 37920.0 44 40331.5 45 42743.0 46 44891.0 47 47039.0 48 49646.5 49 52254.0 50 52768.5 51 53283.0 52 50414.5 53 47546.0 54 45027.5 55 42509.0 56 41062.5 57 39616.0 58 38884.5 59 38153.0 60 34614.5 61 31076.0 62 28528.5 63 25981.0 64 23138.5 65 20296.0 66 16974.0 67 13652.0 68 11941.0 69 10230.0 70 8611.0 71 6992.0 72 5768.0 73 4544.0 74 3764.5 75 2323.5 76 1662.0 77 1389.5 78 1117.0 79 834.0 80 551.0 81 446.5 82 342.0 83 287.5 84 233.0 85 163.0 86 93.0 87 80.0 88 67.0 89 56.0 90 45.0 91 33.0 92 21.0 93 13.5 94 6.0 95 6.5 96 7.0 97 5.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 708773.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.35382374604215 #Duplication Level Percentage of deduplicated Percentage of total 1 73.57672420935417 26.747952637180138 2 8.214764043238095 5.9727616828640455 3 3.861790604985339 4.211725649932755 4 2.4959308446284645 3.6294652003173327 5 1.8005285306132015 3.2728048425816296 6 1.3121656180220447 2.862134256191393 7 0.9940931524151854 2.5297361075034344 8 0.7914387777331608 2.3017460665195486 9 0.6717813756535457 2.1979639553744454 >10 6.20168059480126 42.65168017678045 >50 0.05621479606073487 1.3461635229099564 >100 0.020478246968982275 1.2318666118702633 >500 0.0020076712714688504 0.5617043159707044 >1k 4.015342542937701E-4 0.48229497400395194 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3304 0.46615771198959327 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 940 0.13262356212778986 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 899 0.12683891739668413 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04416082441063641 0.0 2 1.410888958806275E-4 0.0 0.0 0.17311607524552994 0.0 3 1.410888958806275E-4 0.0 0.0 0.2699030578196404 0.0 4 1.410888958806275E-4 0.0 0.0 0.38954644152641255 0.0 5 1.410888958806275E-4 0.0 0.0 0.77796417188578 0.0 6 1.410888958806275E-4 0.0 0.0 1.1267359225026912 0.0 7 1.410888958806275E-4 0.0 0.0 1.410888958806275 0.0 8 1.410888958806275E-4 0.0 0.0 1.872249648335927 0.0 9 1.410888958806275E-4 0.0 0.0 2.1046230598513205 0.0 10 1.410888958806275E-4 0.0 0.0 2.5570951489404927 0.0 11 1.410888958806275E-4 0.0 0.0 3.192277358195078 0.0 12 1.410888958806275E-4 0.0 0.0 3.640657869303712 0.0 13 1.410888958806275E-4 0.0 0.0 3.8553951688340273 0.0 14 1.410888958806275E-4 0.0 0.0 3.9719345968314257 0.0 15 1.410888958806275E-4 0.0 0.0 4.141664538575821 0.0 16 1.410888958806275E-4 0.0 0.0 4.450508131658514 0.0 17 1.410888958806275E-4 0.0 0.0 4.826792216972148 0.0 18 1.410888958806275E-4 0.0 0.0 5.226073792314324 0.0 19 1.410888958806275E-4 0.0 0.0 5.490192205402858 0.0 20 1.410888958806275E-4 0.0 0.0 5.788736309086266 0.0 21 1.410888958806275E-4 0.0 0.0 6.120436303301621 0.0 22 1.410888958806275E-4 0.0 0.0 6.4772501209837285 0.0 23 1.410888958806275E-4 0.0 0.0 6.834769383145239 0.0 24 1.410888958806275E-4 0.0 0.0 7.126964486514018 0.0 25 1.410888958806275E-4 0.0 0.0 7.404345255815332 0.0 26 1.410888958806275E-4 0.0 0.0 7.652661712565236 0.0 27 1.410888958806275E-4 0.0 0.0 7.935121682118252 0.0 28 1.410888958806275E-4 0.0 0.0 8.211655918044283 0.0 29 1.410888958806275E-4 0.0 0.0 8.519794066647572 0.0 30 1.410888958806275E-4 0.0 0.0 8.982706734031911 0.0 31 1.410888958806275E-4 0.0 0.0 9.313842372663744 0.0 32 1.410888958806275E-4 0.0 0.0 9.637500299813905 0.0 33 1.410888958806275E-4 0.0 0.0 9.947472604063643 0.0 34 1.410888958806275E-4 0.0 0.0 10.287355754240075 0.0 35 1.410888958806275E-4 0.0 0.0 10.65065966113269 0.0 36 1.410888958806275E-4 0.0 0.0 10.972624521532282 0.0 37 1.410888958806275E-4 0.0 0.0 11.323653694483284 0.0 38 1.410888958806275E-4 0.0 0.0 11.70036104648456 0.0 39 1.410888958806275E-4 0.0 0.0 12.264293363319426 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTACG 20 7.0314534E-4 45.000004 1 AATCCGG 20 7.0314534E-4 45.000004 2 CTAACGG 35 1.2110468E-7 45.000004 2 CTACGAA 125 0.0 41.399998 11 CGAATAT 125 0.0 41.399998 14 CGTTTTT 1150 0.0 41.282608 1 GCGATAT 55 6.002665E-11 40.909092 9 ACGCTAG 45 1.9264917E-8 40.0 1 TACGAAT 130 0.0 39.807693 12 ATGGGCG 125 0.0 39.6 5 CGTTATT 245 0.0 39.489796 1 TTACGGG 120 0.0 39.375004 3 CACGACC 195 0.0 38.076923 27 ATTACGG 30 1.1394803E-4 37.500004 2 TACTATC 30 1.1394803E-4 37.500004 40 TATAGCG 30 1.1394803E-4 37.500004 1 ACCCGTG 30 1.1394803E-4 37.500004 37 TATGGGA 475 0.0 37.42105 4 AAACACG 230 0.0 37.173912 40 ACGACCA 200 0.0 37.125 28 >>END_MODULE