SRR3551108_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551108_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	178552
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1579	0.884336215780277	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	935	0.523656973878758	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG	405	0.22682467852502353	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	391	0.2189838254402079	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTC	348	0.19490120525113133	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC	323	0.18089968188538913	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG	271	0.1517765132846454	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	257	0.14393566019982976	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC	236	0.1321743805726063	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	230	0.12881401496482817	No Hit
GAATCTATCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTC	220	0.1232134056185313	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGAG	25	3.8775353E-5	45.000004	2
CACATCC	25	3.8775353E-5	45.000004	45
TGAAACG	30	2.1551768E-6	45.000004	4
TAGCATA	25	3.8775353E-5	45.000004	30
AAACGGC	30	2.1551768E-6	45.000004	6
TCGTCCC	30	2.1551768E-6	45.000004	38
ATCGGGG	30	2.1551768E-6	45.000004	4
CAATAAG	25	3.8775353E-5	45.000004	2
ACAAGGC	25	3.8775353E-5	45.000004	4
ACGACGG	25	3.8775353E-5	45.000004	2
AGGACCG	35	1.2042256E-7	45.0	7
AACGGCT	20	7.0172723E-4	45.0	7
AGGCCTA	20	7.0172723E-4	45.0	1
CAAGGCG	20	7.0172723E-4	45.0	5
GCGATGT	55	1.8189894E-12	45.0	9
AACCTGC	20	7.0172723E-4	45.0	33
CAATCAT	20	7.0172723E-4	45.0	12
TAGTATC	20	7.0172723E-4	45.0	38
CGTTTTA	275	0.0	44.18182	1
CTATCTC	90	0.0	42.5	5