##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551108_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 178552 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.802292889466376 31.0 31.0 34.0 30.0 34.0 2 31.971957749003092 33.0 31.0 34.0 30.0 34.0 3 31.666522917693445 31.0 31.0 34.0 30.0 34.0 4 35.561561897934496 37.0 35.0 37.0 33.0 37.0 5 31.831164030646534 37.0 35.0 37.0 0.0 37.0 6 33.7897027196559 37.0 35.0 37.0 17.0 37.0 7 20.983612617052735 32.0 0.0 37.0 0.0 37.0 8 28.14293875173619 35.0 17.0 37.0 17.0 37.0 9 34.6418634347417 35.0 32.0 39.0 28.0 39.0 10 36.169093597383394 37.0 35.0 39.0 32.0 39.0 11 36.62317980196245 38.0 35.0 39.0 33.0 39.0 12 36.95377257045566 39.0 37.0 39.0 33.0 39.0 13 36.67444217930911 39.0 35.0 39.0 33.0 39.0 14 38.06168511134011 40.0 37.0 41.0 33.0 41.0 15 38.19057193422644 40.0 37.0 41.0 33.0 41.0 16 38.28243872933375 40.0 37.0 41.0 34.0 41.0 17 38.22428760249115 40.0 37.0 41.0 34.0 41.0 18 38.11475648550562 40.0 37.0 41.0 33.0 41.0 19 38.033250817688966 40.0 37.0 41.0 34.0 41.0 20 37.98042587033469 40.0 36.0 41.0 34.0 41.0 21 37.911560777812625 40.0 36.0 41.0 33.0 41.0 22 37.86291388503069 39.0 36.0 41.0 33.0 41.0 23 37.811153053452216 39.0 36.0 41.0 33.0 41.0 24 37.63070142031453 39.0 35.0 41.0 33.0 41.0 25 37.50122653344684 39.0 35.0 41.0 33.0 41.0 26 37.333986737757066 39.0 35.0 41.0 33.0 41.0 27 37.29542094179847 39.0 35.0 41.0 33.0 41.0 28 37.19936489090013 39.0 35.0 41.0 33.0 41.0 29 37.15323267171468 39.0 35.0 41.0 32.0 41.0 30 36.896847977059906 39.0 35.0 41.0 31.0 41.0 31 36.77430664456293 39.0 35.0 40.0 31.0 41.0 32 36.614487656257 39.0 35.0 40.0 31.0 41.0 33 36.31348290694027 39.0 35.0 40.0 30.0 41.0 34 36.110645638245444 39.0 35.0 40.0 30.0 41.0 35 35.79562256373494 39.0 35.0 40.0 27.0 41.0 36 35.52989605269053 38.0 35.0 40.0 26.0 41.0 37 35.47317868184059 38.0 35.0 40.0 25.0 41.0 38 35.265575294592054 38.0 34.0 40.0 24.0 41.0 39 35.160743088848065 38.0 34.0 40.0 24.0 41.0 40 35.01809556879788 38.0 34.0 40.0 23.0 41.0 41 34.84717057215825 38.0 34.0 40.0 23.0 41.0 42 34.77604283346028 38.0 34.0 40.0 23.0 41.0 43 34.600094090237015 38.0 34.0 40.0 22.0 41.0 44 34.45698171961109 38.0 33.0 40.0 22.0 41.0 45 34.361244903445495 38.0 33.0 40.0 22.0 41.0 46 34.13887830996013 38.0 33.0 40.0 20.0 41.0 47 34.08524127425064 38.0 33.0 40.0 20.0 41.0 48 33.99078699762534 37.0 33.0 40.0 20.0 41.0 49 33.84326134683454 37.0 33.0 40.0 20.0 41.0 50 33.7021315919172 37.0 33.0 40.0 19.0 41.0 51 31.70452305210807 35.0 29.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 11.0 10 8.0 11 6.0 12 7.0 13 1.0 14 4.0 15 9.0 16 24.0 17 27.0 18 55.0 19 127.0 20 252.0 21 419.0 22 651.0 23 1130.0 24 1708.0 25 2521.0 26 3101.0 27 3516.0 28 3648.0 29 3893.0 30 4448.0 31 5332.0 32 7173.0 33 9925.0 34 13134.0 35 16688.0 36 19336.0 37 30406.0 38 31271.0 39 19715.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.013531072180655 18.86789282673955 23.538801021551144 15.579775079528652 2 33.76887405349702 26.67122182893499 23.497916573323177 16.06198754424481 3 30.89632151978135 24.898628970832025 28.69416192481742 15.510887584569202 4 27.200479412160046 24.2170348133877 30.835834938841344 17.746650835610914 5 22.446122138088622 36.60838299206954 24.3189659034903 16.62652896635154 6 24.24559792105381 35.45969801514405 27.898315336708635 12.396388727093507 7 44.634056185312964 42.75617187149962 9.270688650925221 3.339083292262198 8 74.02941440028675 8.53588870469107 13.329450244186566 4.105246650835611 9 67.8989874098302 9.201241095031138 15.308705587167884 7.591065907970787 10 38.39161700793046 25.73087951969174 22.334670012097316 13.542833460280479 11 30.749585554908375 24.719969532685155 27.99184551279179 16.53859939961468 12 29.015076840360233 22.875128814014964 31.485505623011782 16.62428872261302 13 22.94065594336664 26.122362112997894 33.011671669877686 17.925310273757784 14 18.251265737712263 28.705923204444645 32.028204668667954 21.014606389175142 15 18.23950445808504 25.272749675164658 38.007415206774496 18.480330659975806 16 20.868990546171425 24.51834759621847 34.84083068237824 19.771831175231867 17 19.99249518347596 24.796137819794794 32.532259509834674 22.679107486894573 18 21.278955150320357 25.883776154845645 32.999910390250456 19.83735830458354 19 23.266051346386487 26.390071239750885 29.60762130919844 20.73625610466419 20 24.21479456964918 25.495093866212642 32.28079215018594 18.009319413952237 21 23.04874770375017 27.81542631838344 30.54012276535687 18.59570321250952 22 21.488978000806487 24.78885702764461 30.979210538106543 22.742954433442357 23 21.152941440028673 26.75803127380259 32.043886374837584 20.045140911331153 24 20.938998163000132 24.399054617142347 33.398113714772165 21.26383350508535 25 19.884403423092433 27.204959899637082 31.53031049778216 21.38032617948833 26 19.101438236480128 26.89804650746001 32.31551592813298 21.684999327926878 27 20.27868632107173 27.600362919485637 31.61207939423809 20.508871365204534 28 17.353488059500872 26.89860656839464 34.47847125767283 21.26943411443165 29 21.93870693131413 25.057686276266857 32.07805009184999 20.92555670056902 30 20.026098839553743 27.17751691384023 33.02175276670102 19.774631479905015 31 23.215085801335185 25.55726062995654 29.219499081500068 22.00815448720821 32 22.970339172902012 27.294009588243203 28.798893319593173 20.936757919261613 33 21.10925668712756 27.12543124691966 29.432322236659346 22.332989829293425 34 20.12410950311394 27.45922756395896 30.67957793807966 21.73708499484744 35 20.136430843675793 26.14868497692549 31.08674223755545 22.62814194184327 36 20.71049330167122 28.85881983959855 30.00750481652404 20.423182042206193 37 20.15379273264931 28.327882073569604 30.669496841256326 20.848828352524755 38 19.551727227922395 29.231260361127294 28.474057977507954 22.742954433442357 39 21.065571934226444 27.945920516152157 29.311349074779336 21.677158474842063 40 21.32768045163314 26.56425019042072 29.813163672207537 22.29490568573861 41 18.442806577355615 28.137461355795512 29.98902280568126 23.430709261167614 42 19.300259868273667 26.075316994489 30.868318473049865 23.756104664187465 43 20.614722881849545 25.777924638200638 30.119517003449975 23.487835476499843 44 19.788072942336125 27.00333796317039 29.584658810878622 23.623930283614857 45 20.246762847797843 27.606523589766567 28.411331152829426 23.735382409606164 46 20.902034141314573 29.087884761862092 28.110018369998656 21.90006272682468 47 19.72198575204982 26.70370536314351 31.558313544513645 22.015995340293024 48 19.558447959137954 25.994108158967695 31.08338187194767 23.364062009946682 49 19.209529996863658 25.67823379183655 32.22366593485371 22.888570276446078 50 19.222411398360144 26.154845647206415 30.84759621846857 23.77514673596487 51 19.414512298938124 25.174178950669834 29.469846319279537 25.941462431112505 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 237.0 1 434.0 2 631.0 3 2640.5 4 4650.0 5 3121.0 6 1592.0 7 1371.0 8 1150.0 9 1081.5 10 1013.0 11 1003.0 12 993.0 13 969.0 14 945.0 15 940.0 16 935.0 17 921.5 18 908.0 19 904.5 20 901.0 21 1018.0 22 1135.0 23 1246.5 24 1358.0 25 1727.0 26 2291.0 27 2486.0 28 2689.0 29 2892.0 30 3440.5 31 3989.0 32 4529.0 33 5069.0 34 5462.5 35 5856.0 36 6021.0 37 6186.0 38 6818.0 39 7450.0 40 8210.5 41 8971.0 42 9853.5 43 10736.0 44 11551.0 45 12366.0 46 13815.5 47 15265.0 48 14352.0 49 13439.0 50 12854.0 51 12269.0 52 11106.5 53 9944.0 54 9276.5 55 8609.0 56 8066.0 57 7523.0 58 7276.5 59 7030.0 60 6702.5 61 6375.0 62 5526.0 63 4677.0 64 3882.5 65 3088.0 66 2519.5 67 1951.0 68 1652.5 69 1354.0 70 1162.0 71 970.0 72 759.0 73 548.0 74 477.5 75 319.5 76 232.0 77 178.5 78 125.0 79 114.5 80 104.0 81 75.5 82 47.0 83 36.0 84 25.0 85 17.0 86 9.0 87 7.5 88 6.0 89 6.0 90 6.0 91 3.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 178552.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.37412070433264 #Duplication Level Percentage of deduplicated Percentage of total 1 77.95517210708886 39.269232492495185 2 7.916036645023571 7.9752677091267525 3 3.5733345192564263 5.400107531699449 4 2.2691897180467846 4.5723374703167705 5 1.6932758160633283 4.264864017205072 6 1.2607844881259451 3.810654599220395 7 1.0706661922974294 3.7753707603387245 8 0.8182869340923241 3.2976387830996012 9 0.6315040469625545 2.8630314978269635 >10 2.75949479676243 20.11794883283301 >50 0.030018678288712977 1.029391997849366 >100 0.020012452192475317 2.2161611183296746 >500 0.0011118028995819621 0.523656973878758 >1k 0.0011118028995819621 0.884336215780277 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1579 0.884336215780277 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 935 0.523656973878758 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG 405 0.22682467852502353 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 391 0.2189838254402079 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTC 348 0.19490120525113133 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC 323 0.18089968188538913 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCG 271 0.1517765132846454 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 257 0.14393566019982976 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGC 236 0.1321743805726063 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 230 0.12881401496482817 No Hit GAATCTATCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTC 220 0.1232134056185313 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.044804874770375015 0.0 2 0.0 0.0 0.0 0.33827680451633135 0.0 3 0.0 0.0 0.0 0.4194856400376361 0.0 4 0.0 0.0 0.0 0.5634213002374658 0.0 5 0.0 0.0 0.0 1.1794883283301223 0.0 6 0.0 0.0 0.0 1.4091133115282943 0.0 7 0.0 0.0 0.0 1.7546709081948115 0.0 8 0.0 0.0 0.0 2.444665979658587 0.0 9 0.0 0.0 0.0 2.6748510237913883 0.0 10 0.0 0.0 0.0 3.8879430081992923 0.0 11 0.0 0.0 0.0 4.640664904341592 0.0 12 5.600609346296877E-4 0.0 0.0 5.732223665934853 0.0 13 5.600609346296877E-4 0.0 0.0 5.986491330256732 0.0 14 5.600609346296877E-4 0.0 0.0 6.123706259241005 0.0 15 5.600609346296877E-4 0.0 0.0 6.392535507863255 0.0 16 5.600609346296877E-4 0.0 0.0 6.8876293740759 0.0 17 5.600609346296877E-4 0.0 0.0 7.4359290290783635 0.0 18 5.600609346296877E-4 0.0 0.0 8.020632644831757 0.0 19 5.600609346296877E-4 0.0 0.0 8.348828352524755 0.0 20 5.600609346296877E-4 0.0 0.0 8.687665217975717 0.0 21 5.600609346296877E-4 0.0 0.0 9.146915184372059 0.0 22 5.600609346296877E-4 0.0 0.0 9.566400824409696 0.0 23 5.600609346296877E-4 0.0 0.0 9.995967561270666 0.0 24 5.600609346296877E-4 0.0 0.0 10.365607778126261 0.0 25 5.600609346296877E-4 0.0 0.0 10.681482145257403 0.0 26 5.600609346296877E-4 0.0 0.0 10.9587123078991 0.0 27 5.600609346296877E-4 0.0 0.0 11.277947040638022 0.0 28 5.600609346296877E-4 0.0 0.0 11.596061651507684 0.0 29 5.600609346296877E-4 0.0 0.0 11.916976567050495 0.0 30 5.600609346296877E-4 0.0 0.0 12.30229849007572 0.0 31 5.600609346296877E-4 0.0 0.0 12.670258524127425 0.0 32 5.600609346296877E-4 0.0 0.0 12.994533805278014 0.0 33 5.600609346296877E-4 0.0 0.0 13.370894753349164 0.0 34 5.600609346296877E-4 0.0 0.0 13.73773466553161 0.0 35 5.600609346296877E-4 0.0 0.0 14.084972445002016 0.0 36 5.600609346296877E-4 0.0 0.0 14.453492539988352 0.0 37 5.600609346296877E-4 0.0 0.0 14.791769344504683 0.0 38 5.600609346296877E-4 0.0 0.0 15.156929073883239 0.0 39 5.600609346296877E-4 0.0 0.0 15.53104977821587 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGAG 25 3.8775353E-5 45.000004 2 CACATCC 25 3.8775353E-5 45.000004 45 TGAAACG 30 2.1551768E-6 45.000004 4 TAGCATA 25 3.8775353E-5 45.000004 30 AAACGGC 30 2.1551768E-6 45.000004 6 TCGTCCC 30 2.1551768E-6 45.000004 38 ATCGGGG 30 2.1551768E-6 45.000004 4 CAATAAG 25 3.8775353E-5 45.000004 2 ACAAGGC 25 3.8775353E-5 45.000004 4 ACGACGG 25 3.8775353E-5 45.000004 2 AGGACCG 35 1.2042256E-7 45.0 7 AACGGCT 20 7.0172723E-4 45.0 7 AGGCCTA 20 7.0172723E-4 45.0 1 CAAGGCG 20 7.0172723E-4 45.0 5 GCGATGT 55 1.8189894E-12 45.0 9 AACCTGC 20 7.0172723E-4 45.0 33 CAATCAT 20 7.0172723E-4 45.0 12 TAGTATC 20 7.0172723E-4 45.0 38 CGTTTTA 275 0.0 44.18182 1 CTATCTC 90 0.0 42.5 5 >>END_MODULE