SRR3551104_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551104_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	124602
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2150	1.7254939728094252	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1224	0.9823277314970867	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	477	0.38281889536283525	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	283	0.2271231601418918	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG	222	0.17816728463427553	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC	218	0.17495706328951383	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC	209	0.16773406526379994	RNA PCR Primer, Index 36 (95% over 22bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	191	0.1532880692123722	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	173	0.13884207316094443	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG	153	0.12279096643713584	No Hit
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	135	0.10834497038570809	RNA PCR Primer, Index 15 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAT	75	0.0	45.000004	7
TTGCGGG	30	2.1498981E-6	45.000004	3
CATATGC	20	7.00907E-4	45.0	33
CGGTTTA	25	3.870747E-5	45.0	1
TTGTCTC	20	7.00907E-4	45.0	40
ACCTGGT	25	3.870747E-5	45.0	11
ACACAAC	25	3.870747E-5	45.0	11
GTGATTC	20	7.00907E-4	45.0	20
CACTGGT	20	7.00907E-4	45.0	24
TACGGGA	35	1.2002965E-7	45.0	4
TGACGGG	20	7.00907E-4	45.0	3
ACGGGAC	25	3.870747E-5	45.0	5
CGTTATT	155	0.0	45.0	1
AGGCCAC	20	7.00907E-4	45.0	7
TCATGCA	25	3.870747E-5	45.0	24
CTCATGC	20	7.00907E-4	45.0	23
AACGAGC	25	3.870747E-5	45.0	15
AACGAAG	20	7.00907E-4	45.0	2
GCCTAAA	20	7.00907E-4	45.0	9
CGAGATA	40	6.73208E-9	45.0	19