SRR3551100_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551100_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	316994
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1787	0.563733067502855	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1052	0.33186748014157996	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	704	0.22208622245215998	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	572	0.18044505574237998	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	537	0.169403837296605	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	469	0.14795232717338497	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	404	0.12744720720266	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	362	0.11419774506772999	No Hit
GAATCTATCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	336	0.10599569707943998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAG	30	2.1605101E-6	45.000004	2
GTAGACG	30	2.1605101E-6	45.000004	1
CGGGCAT	30	2.1605101E-6	45.000004	6
GATCGTA	25	3.8843922E-5	45.0	10
GTTTCGA	20	7.025547E-4	45.0	11
GCGAAGA	20	7.025547E-4	45.0	1
CGTTGCG	20	7.025547E-4	45.0	11
CGTTGCC	20	7.025547E-4	45.0	43
CACGCTT	20	7.025547E-4	45.0	19
CACGCAA	20	7.025547E-4	45.0	18
ATAGAAC	20	7.025547E-4	45.0	37
CGCGAGA	20	7.025547E-4	45.0	16
CGACAAT	20	7.025547E-4	45.0	20
CGACAAG	20	7.025547E-4	45.0	2
CGTTATT	175	0.0	45.0	1
TATGACA	20	7.025547E-4	45.0	33
ACGATCC	20	7.025547E-4	45.0	22
CGGGCAA	25	3.8843922E-5	45.0	6
CATACGA	35	1.2082091E-7	45.0	18
GCGATAC	20	7.025547E-4	45.0	9