SRR3551099_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551099_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684806
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6204	0.9059500062791506	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	3521	0.5141602147177449	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3510	0.5125539203803705	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG	2747	0.4011355040697657	No Hit
GAATCTATCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	2166	0.31629395770480984	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC	2105	0.30738632547027916	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG	1818	0.26547664594060216	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC	1396	0.2038533540886032	No Hit
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	901	0.13157010890675608	TruSeq Adapter, Index 16 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	858	0.12529095831520168	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG	774	0.11302471064797914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	35	1.210974E-7	45.0	6
CGACGGT	35	1.210974E-7	45.0	28
CACGCTA	20	7.0312875E-4	45.0	38
CACGACG	40	6.8084773E-9	45.0	26
TGCGGAA	20	7.0312875E-4	45.0	2
CTCGCGT	35	1.210974E-7	45.0	12
GGTTCGC	35	1.210974E-7	45.0	10
TGTACGA	20	7.0312875E-4	45.0	1
AATCGTT	40	6.8084773E-9	45.0	22
AGGATCG	25	3.8891492E-5	44.999996	7
TTATTCG	25	3.8891492E-5	44.999996	16
CGTTTTA	1430	0.0	44.055943	1
CGTTTTT	2705	0.0	43.419598	1
CGTTATT	540	0.0	42.500004	1
AGGCGAT	265	0.0	42.45283	7
TAGGCGA	85	0.0	42.35294	6
CGGTTTA	80	0.0	42.1875	1
ACGGGCG	55	6.002665E-11	40.909092	5
TACGGCT	370	0.0	40.743244	7
TTAATCG	45	1.9263098E-8	40.0	20