##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551099_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 684806 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.67949901139885 31.0 31.0 34.0 30.0 34.0 2 31.846296615391804 31.0 31.0 34.0 30.0 34.0 3 31.457697508491457 31.0 31.0 34.0 28.0 34.0 4 35.41940783229119 37.0 35.0 37.0 33.0 37.0 5 31.826983116386245 37.0 35.0 37.0 0.0 37.0 6 33.72646413728852 37.0 35.0 37.0 19.0 37.0 7 20.934007587550344 32.0 0.0 37.0 0.0 37.0 8 28.067382587185275 35.0 17.0 37.0 17.0 37.0 9 34.57316962760256 35.0 32.0 39.0 28.0 39.0 10 36.08356089169779 37.0 35.0 39.0 32.0 39.0 11 36.49850468599866 37.0 35.0 39.0 32.0 39.0 12 36.940266294395784 39.0 37.0 39.0 33.0 39.0 13 36.80241703489747 39.0 37.0 39.0 33.0 39.0 14 38.24584626887031 40.0 37.0 41.0 34.0 41.0 15 38.31799370916727 40.0 38.0 41.0 34.0 41.0 16 38.3674675747584 40.0 38.0 41.0 34.0 41.0 17 38.264206213146494 40.0 37.0 41.0 33.0 41.0 18 38.0966302865337 40.0 37.0 41.0 33.0 41.0 19 38.0024488687307 40.0 37.0 41.0 33.0 41.0 20 37.964065735405356 40.0 37.0 41.0 34.0 41.0 21 37.922585374544035 40.0 36.0 41.0 33.0 41.0 22 37.88834356007395 39.0 36.0 41.0 33.0 41.0 23 37.85113740241762 39.0 36.0 41.0 33.0 41.0 24 37.688519084236994 39.0 36.0 41.0 33.0 41.0 25 37.558216487589185 39.0 36.0 41.0 33.0 41.0 26 37.37875106234466 39.0 35.0 41.0 33.0 41.0 27 37.356134438074434 39.0 35.0 41.0 33.0 41.0 28 37.221878897089105 39.0 35.0 41.0 32.0 41.0 29 37.15561925567241 39.0 35.0 41.0 32.0 41.0 30 36.97212933297897 39.0 35.0 40.0 31.0 41.0 31 36.7453001287956 39.0 35.0 40.0 31.0 41.0 32 36.63661241285853 39.0 35.0 40.0 31.0 41.0 33 36.418901119441124 39.0 35.0 40.0 30.0 41.0 34 36.10692955377143 39.0 35.0 40.0 29.0 41.0 35 35.904954103789976 39.0 35.0 40.0 27.0 41.0 36 35.5838091371863 39.0 35.0 40.0 25.0 41.0 37 35.42063299679033 39.0 35.0 40.0 25.0 41.0 38 35.29490103766614 39.0 35.0 40.0 24.0 41.0 39 35.053169802834674 38.0 34.0 40.0 23.0 41.0 40 34.82350621927962 38.0 34.0 40.0 22.0 41.0 41 34.67787081304778 38.0 34.0 40.0 21.0 41.0 42 34.422767907991464 38.0 33.0 40.0 19.0 41.0 43 34.276665216134205 38.0 33.0 40.0 18.0 41.0 44 33.99656253011802 38.0 33.0 40.0 17.0 41.0 45 33.98369611247565 38.0 33.0 40.0 18.0 41.0 46 33.58179542819426 38.0 33.0 40.0 15.0 41.0 47 33.369095773109464 38.0 32.0 40.0 14.0 41.0 48 33.21082467151281 38.0 32.0 40.0 13.0 41.0 49 33.04994699228687 37.0 31.0 40.0 13.0 41.0 50 32.96284057090621 37.0 31.0 40.0 12.0 41.0 51 30.880829023110195 35.0 27.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 18.0 9 27.0 10 21.0 11 11.0 12 11.0 13 14.0 14 8.0 15 24.0 16 42.0 17 100.0 18 208.0 19 445.0 20 823.0 21 1481.0 22 2526.0 23 4406.0 24 7348.0 25 10891.0 26 13661.0 27 15214.0 28 16161.0 29 17058.0 30 18987.0 31 22143.0 32 27100.0 33 35524.0 34 46116.0 35 59168.0 36 75428.0 37 117343.0 38 117180.0 39 75310.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.516154940231246 19.091392306726284 23.007975981518854 18.384476771523612 2 33.165305210526775 27.672070630222283 23.213143576428948 15.949480582821995 3 26.92163912115256 27.24800892515545 31.145609121415408 14.684742832276587 4 24.648440580251926 22.94941925158366 35.690545935637246 16.71159423252717 5 22.316539282658155 34.40346609112654 26.585631551125427 16.69436307508988 6 22.414085156964163 34.01810147691463 29.797052011810642 13.770761354310565 7 44.16637704693008 41.72247322599393 10.997421167454725 3.113728559621265 8 74.29257337114453 6.3597573619390015 14.734976037009021 4.612693229907448 9 68.41280596256458 7.2163503240333755 15.815720072546094 8.555123640855951 10 33.88229659202752 30.65057841198821 22.245716305055737 13.221408690928527 11 23.447078442653833 24.753433819213033 33.233353679728275 18.566134058404863 12 22.601145433889304 22.14729427020207 35.66309290514394 19.588467390764684 13 19.391769347815295 23.58726413027923 38.67985969749097 18.341106824414506 14 17.290298274255775 27.646808001098123 33.58717651422447 21.47571721042164 15 16.629089114289304 26.614982929472 38.994109280584574 17.761818675654126 16 18.86913958113685 27.231361874749926 33.45984118129806 20.43965736281516 17 19.137828815752197 26.085197851654335 33.35192740717809 21.425045925415372 18 19.32810168135209 26.837089628303488 33.798039152694344 20.03676953765008 19 19.500267228967036 27.592632073901225 31.66546437969294 21.241636317438807 20 20.696080349763292 27.291816952538383 33.60718218006267 18.404920517635652 21 20.713457533958525 28.038451765901584 33.27307295788881 17.97501774225109 22 19.73551633601341 23.83521756526666 32.913409053074886 23.515857045645046 23 18.705151531966717 26.794011734710267 34.633166181371074 19.867670551951942 24 20.8488243385718 24.20524936989454 33.48919255964463 21.45673373188903 25 18.57445758360762 29.469952074018043 31.1882489347348 20.767341407639535 26 18.885494578026478 27.520786908993205 31.886110810944995 21.707607702035318 27 20.487700166178453 27.652795098173787 30.609690919764137 21.249813815883623 28 17.28898403343429 27.429958265552578 33.65595511721568 21.625102583797457 29 19.3162735139587 27.626948362017856 32.01592859875644 21.04084952526701 30 18.468150103825025 29.71454689357278 31.731468474283226 20.08583452831897 31 19.57809949095072 29.09510138637804 29.736742960780134 21.590056161891106 32 19.48508044614095 28.758801762835024 31.292219986390307 20.46389780463372 33 17.74663189282804 27.374760151050076 29.708705823255055 25.169902132866827 34 18.077090446053333 27.923090627126513 30.17146461917682 23.82835430764333 35 17.852209238820922 26.76144776768895 29.622404009310664 25.763938984179465 36 18.153170386941703 29.34933397195702 28.524428816336307 23.97306682476497 37 17.399088208923402 27.942658212690898 32.657570173158526 22.00068340522717 38 17.94201569495594 28.269466096967612 28.65453865766363 25.133979550412818 39 20.34809858558482 25.009126672371444 30.49973277103296 24.143041971010767 40 19.836128772236226 25.897991547971248 30.62706810395937 23.638811575833156 41 17.970636939512797 27.525021684973556 28.86248076097464 25.64186061453901 42 18.530357502708796 27.017140620847364 31.376185372207605 23.076316504236235 43 21.36984781091287 25.458597033320384 29.719511803342847 23.4520433524239 44 19.74281767391057 26.20815238184245 29.747548940867922 24.30148100337906 45 18.794811961343797 25.757951887103793 29.67030078591601 25.7769353656364 46 21.183371641019498 27.284953694915053 28.161552322847637 23.370122341217805 47 18.79305964024848 25.85973253739015 32.05491774312725 23.292290079234117 48 19.455290987520556 25.563590272281495 30.06559521966805 24.915523520529902 49 18.614468915284036 24.249057397277475 33.013145328750035 24.123328358688447 50 18.536490626542406 24.660560801161203 32.53943452598254 24.263514046313848 51 18.66557828056413 24.032645742005766 29.814283169247936 27.487492808182175 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 432.0 1 872.0 2 1312.0 3 9587.0 4 17862.0 5 12412.0 6 6962.0 7 5977.0 8 4992.0 9 4842.0 10 4692.0 11 4535.5 12 4379.0 13 4284.5 14 4190.0 15 4045.0 16 3900.0 17 3772.0 18 3644.0 19 3616.5 20 3589.0 21 3867.5 22 4146.0 23 4503.5 24 4861.0 25 5642.5 26 7498.5 27 8573.0 28 9986.5 29 11400.0 30 12870.5 31 14341.0 32 16500.0 33 18659.0 34 20446.0 35 22233.0 36 24190.5 37 26148.0 38 28797.5 39 31447.0 40 34227.0 41 37007.0 42 40081.0 43 43155.0 44 50276.5 45 57398.0 46 66973.5 47 76549.0 48 67862.0 49 59175.0 50 54434.0 51 49693.0 52 42573.0 53 35453.0 54 31304.5 55 27156.0 56 24767.5 57 22379.0 58 20728.5 59 19078.0 60 17690.5 61 16303.0 62 14305.5 63 12308.0 64 10133.5 65 7959.0 66 6802.0 67 5645.0 68 4894.5 69 4144.0 70 3474.5 71 2805.0 72 2330.5 73 1856.0 74 1466.0 75 826.0 76 576.0 77 489.5 78 403.0 79 325.0 80 247.0 81 182.5 82 118.0 83 94.0 84 70.0 85 54.5 86 39.0 87 27.5 88 16.0 89 10.5 90 5.0 91 4.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 1.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 684806.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.08089763317483 #Duplication Level Percentage of deduplicated Percentage of total 1 78.13127092991824 35.22227826741492 2 7.640325255429811 6.888654414483833 3 3.2404081173892427 4.382415198891996 4 1.9770641385293992 3.565113041730593 5 1.482073516641096 3.340660224426834 6 1.1637328742457445 3.1477273545739632 7 0.948219219847579 2.9922601508630327 8 0.808749762522476 2.9167332204104155 9 0.6861336252232262 2.783836774923066 >10 3.856115781389941 26.566498263264243 >50 0.034539381854064403 1.074216883076198 >100 0.024670986411678322 2.2710924148118714 >500 0.003876869293263719 1.119975544424853 >1k 0.002467098641167821 2.7428199494121484 >5k 3.5244266302397444E-4 0.9857182972920678 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6204 0.9059500062791506 No Hit GAATCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC 3521 0.5141602147177449 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3510 0.5125539203803705 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG 2747 0.4011355040697657 No Hit GAATCTATCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC 2166 0.31629395770480984 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC 2105 0.30738632547027916 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG 1818 0.26547664594060216 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC 1396 0.2038533540886032 No Hit GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC 901 0.13157010890675608 TruSeq Adapter, Index 16 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT 858 0.12529095831520168 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG 774 0.11302471064797914 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.460267579431255E-4 0.0 0.0 0.10557734599287974 0.0 2 1.460267579431255E-4 0.0 0.0 0.5753454262959145 0.0 3 1.460267579431255E-4 0.0 0.0 0.7778845395630295 0.0 4 1.460267579431255E-4 0.0 0.0 1.1806263379701696 0.0 5 1.460267579431255E-4 0.0 0.0 2.645274720139718 0.0 6 1.460267579431255E-4 0.0 0.0 3.3961443094832697 0.0 7 1.460267579431255E-4 0.0 0.0 4.066845208716045 0.0 8 1.460267579431255E-4 0.0 0.0 5.299457072513968 0.0 9 1.460267579431255E-4 0.0 0.0 5.760463547340414 0.0 10 1.460267579431255E-4 0.0 0.0 7.727590003592258 0.0 11 1.460267579431255E-4 0.0 0.0 8.60229028367158 0.0 12 1.460267579431255E-4 0.0 0.0 10.080227100813953 0.0 13 1.460267579431255E-4 0.0 0.0 10.504434832638733 0.0 14 1.460267579431255E-4 0.0 0.0 10.724643183616966 0.0 15 1.460267579431255E-4 0.0 0.0 11.020493395209739 0.0 16 1.460267579431255E-4 0.0 0.0 11.496540626104327 0.0 17 1.460267579431255E-4 0.0 0.0 12.042972754327502 0.0 18 1.460267579431255E-4 0.0 0.0 12.670887813482942 0.0 19 1.460267579431255E-4 0.0 0.0 13.052747785504216 0.0 20 1.460267579431255E-4 0.0 0.0 13.415332225476996 0.0 21 1.460267579431255E-4 0.0 0.0 13.856187007707293 0.0 22 1.460267579431255E-4 0.0 0.0 14.315441161438422 0.0 23 1.460267579431255E-4 0.0 0.0 14.799957944293713 0.0 24 1.460267579431255E-4 0.0 0.0 15.171888096774852 0.0 25 1.460267579431255E-4 0.0 0.0 15.524104636933671 0.0 26 1.460267579431255E-4 0.0 0.0 15.864054929425269 0.0 27 1.460267579431255E-4 0.0 0.0 16.209262185202817 0.0 28 1.460267579431255E-4 0.0 0.0 16.571116491385883 0.0 29 1.460267579431255E-4 0.0 0.0 16.944506911446453 0.0 30 1.460267579431255E-4 0.0 0.0 17.37134312491421 0.0 31 1.460267579431255E-4 0.0 0.0 17.765761398118592 0.0 32 1.460267579431255E-4 0.0 0.0 18.15068793205667 0.0 33 1.460267579431255E-4 0.0 0.0 18.50538692710052 0.0 34 1.460267579431255E-4 0.0 0.0 18.86548891218827 0.0 35 1.460267579431255E-4 0.0 0.0 19.24486642932451 0.0 36 1.460267579431255E-4 0.0 0.0 19.611977698793527 0.0 37 1.460267579431255E-4 0.0 0.0 19.968721068448584 0.0 38 1.460267579431255E-4 0.0 0.0 20.32458827755598 0.0 39 1.460267579431255E-4 0.0 0.0 20.663954463015802 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 35 1.210974E-7 45.0 6 CGACGGT 35 1.210974E-7 45.0 28 CACGCTA 20 7.0312875E-4 45.0 38 CACGACG 40 6.8084773E-9 45.0 26 TGCGGAA 20 7.0312875E-4 45.0 2 CTCGCGT 35 1.210974E-7 45.0 12 GGTTCGC 35 1.210974E-7 45.0 10 TGTACGA 20 7.0312875E-4 45.0 1 AATCGTT 40 6.8084773E-9 45.0 22 AGGATCG 25 3.8891492E-5 44.999996 7 TTATTCG 25 3.8891492E-5 44.999996 16 CGTTTTA 1430 0.0 44.055943 1 CGTTTTT 2705 0.0 43.419598 1 CGTTATT 540 0.0 42.500004 1 AGGCGAT 265 0.0 42.45283 7 TAGGCGA 85 0.0 42.35294 6 CGGTTTA 80 0.0 42.1875 1 ACGGGCG 55 6.002665E-11 40.909092 5 TACGGCT 370 0.0 40.743244 7 TTAATCG 45 1.9263098E-8 40.0 20 >>END_MODULE