SRR3551098_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551098_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	566523
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7857	1.3868810268956424	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4486	0.791847815534409	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	886	0.15639259129814675	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	801	0.14138878739256835	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG	608	0.10732132675990208	No Hit
GAATCTATCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	597	0.10537965801918016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGCG	70	0.0	45.0	5
AGATACG	35	1.2104647E-7	45.0	1
CCGTGCC	25	3.888292E-5	45.0	12
CGTTCTA	40	6.8048394E-9	45.0	1
TTGACGA	20	7.0302555E-4	45.0	1
CGTGTAC	20	7.0302555E-4	45.0	18
ATGCGAA	25	3.888292E-5	45.0	1
CGCACGG	20	7.0302555E-4	45.0	2
TCGGTTA	20	7.0302555E-4	45.0	1
TGCGTAA	20	7.0302555E-4	45.0	1
CGTTATT	735	0.0	44.387756	1
CGTTTTA	1740	0.0	43.83621	1
CGTTTTT	3035	0.0	43.36903	1
TAGGCGA	105	0.0	42.857143	6
AGGCGAT	285	0.0	41.842106	7
CTCGTCC	135	0.0	41.666664	37
CCTCGTC	135	0.0	41.666664	36
TCCTCGT	140	0.0	40.17857	35
TCGTCCC	140	0.0	40.17857	38
CGGTTTT	325	0.0	40.153847	1