SRR3551097_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551097_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	288697
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1172	0.40596196011735486	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	706	0.24454705106045438	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	467	0.1617612929819153	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	373	0.12920120403052335	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	299	0.10356879357942755	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	20	7.024498E-4	45.000004	1
GATGTCG	20	7.024498E-4	45.000004	9
CGGCACG	20	7.024498E-4	45.000004	2
ATAGCCG	20	7.024498E-4	45.000004	45
TATGCGG	20	7.024498E-4	45.000004	2
TTATCCG	20	7.024498E-4	45.000004	10
TCTACGG	20	7.024498E-4	45.000004	2
CAGGCGA	20	7.024498E-4	45.000004	6
GTACTAT	20	7.024498E-4	45.000004	9
TTGCGAA	20	7.024498E-4	45.000004	1
CAATCGG	20	7.024498E-4	45.000004	2
ATGGGCG	25	3.883525E-5	45.0	5
CGAATAT	35	1.2076998E-7	45.0	14
AATCGAG	25	3.883525E-5	45.0	1
TACCGGG	25	3.883525E-5	45.0	3
TAGGCAC	65	0.0	44.999996	6
CGTTATT	95	0.0	42.63158	1
CGTTTTA	285	0.0	42.63158	1
TACGGCT	80	0.0	42.187504	7
AAACGGC	60	3.6379788E-12	41.250004	6