SRR3551093_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551093_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157245
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1622	1.0315113358135393	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	858	0.5456453305351522	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	319	0.20286813571178736	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	240	0.15262806448535726	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	166	0.10556774460237209	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	162	0.10302394352761614	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	159	0.10111609272154917	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAA	20	7.014698E-4	45.000004	1
CGGGTAC	20	7.014698E-4	45.000004	6
AGGTAAT	25	3.875405E-5	45.000004	7
TTAATCG	20	7.014698E-4	45.000004	20
CGAAAAG	20	7.014698E-4	45.000004	2
TTAGCGG	25	3.875405E-5	45.000004	2
ATAATGC	20	7.014698E-4	45.000004	32
GACAAAC	20	7.014698E-4	45.000004	12
CCTAATA	20	7.014698E-4	45.000004	28
TACGGGA	20	7.014698E-4	45.000004	4
ACGGGTC	20	7.014698E-4	45.000004	5
ACGGGTA	20	7.014698E-4	45.000004	5
ACGGGCG	20	7.014698E-4	45.000004	5
TACGAAA	20	7.014698E-4	45.000004	20
GAGCGAT	20	7.014698E-4	45.000004	6
GTGTATT	20	7.014698E-4	45.000004	9
GCGATTG	25	3.875405E-5	45.000004	9
CATACGA	20	7.014698E-4	45.000004	18
CGATGCC	20	7.014698E-4	45.000004	18
GGTTAGT	20	7.014698E-4	45.000004	38