##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551093_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157245 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.879372953035073 31.0 31.0 34.0 30.0 34.0 2 32.07118827307705 33.0 31.0 34.0 30.0 34.0 3 31.666730261693537 33.0 31.0 34.0 30.0 34.0 4 35.6002416611021 37.0 35.0 37.0 33.0 37.0 5 32.04044643708862 37.0 35.0 37.0 10.0 37.0 6 33.94015072021368 37.0 35.0 37.0 19.0 37.0 7 20.720550732932686 32.0 0.0 37.0 0.0 37.0 8 28.097077808515373 35.0 17.0 37.0 17.0 37.0 9 34.833482781646474 37.0 32.0 39.0 32.0 39.0 10 36.278813316798626 37.0 35.0 39.0 32.0 39.0 11 36.70921809914465 38.0 35.0 39.0 33.0 39.0 12 37.02330757734745 39.0 37.0 39.0 34.0 39.0 13 36.74906038347801 39.0 35.0 39.0 33.0 39.0 14 38.117326465070434 40.0 37.0 41.0 33.0 41.0 15 38.350605742630925 40.0 38.0 41.0 34.0 41.0 16 38.425164552132024 40.0 38.0 41.0 34.0 41.0 17 38.41738688034596 40.0 37.0 41.0 34.0 41.0 18 38.276886387484495 40.0 37.0 41.0 34.0 41.0 19 38.16059652135203 40.0 37.0 41.0 34.0 41.0 20 38.06276193201692 40.0 36.0 41.0 34.0 41.0 21 37.94219848007886 40.0 36.0 41.0 34.0 41.0 22 37.83807434258641 39.0 36.0 41.0 33.0 41.0 23 37.775248815542625 39.0 35.0 41.0 33.0 41.0 24 37.614957550319566 39.0 35.0 41.0 33.0 41.0 25 37.47193233489141 39.0 35.0 41.0 33.0 41.0 26 37.30723393430634 39.0 35.0 41.0 33.0 41.0 27 37.2947375115266 39.0 35.0 41.0 33.0 41.0 28 37.187471779706826 39.0 35.0 41.0 33.0 41.0 29 37.148379916690516 39.0 35.0 41.0 33.0 41.0 30 37.00648033323794 39.0 35.0 41.0 32.0 41.0 31 36.80883334923209 39.0 35.0 41.0 31.0 41.0 32 36.60519571369519 39.0 35.0 41.0 31.0 41.0 33 36.34257369073738 39.0 35.0 41.0 30.0 41.0 34 36.058780883334926 39.0 35.0 41.0 29.0 41.0 35 35.81685904162295 39.0 35.0 41.0 27.0 41.0 36 35.58094057044739 39.0 35.0 40.0 26.0 41.0 37 35.42272250310026 39.0 35.0 40.0 25.0 41.0 38 35.31580654392827 39.0 35.0 40.0 24.0 41.0 39 35.201373652580365 39.0 35.0 40.0 24.0 41.0 40 35.07443161944736 38.0 35.0 40.0 23.0 41.0 41 34.96111164106967 38.0 34.0 40.0 23.0 41.0 42 34.82288149066743 38.0 34.0 40.0 23.0 41.0 43 34.72065248497567 38.0 34.0 40.0 22.0 41.0 44 34.53316162676079 38.0 34.0 40.0 21.0 41.0 45 34.4456930268053 38.0 34.0 40.0 20.0 41.0 46 34.30600655028777 38.0 34.0 40.0 20.0 41.0 47 34.28018060987631 38.0 33.0 40.0 20.0 41.0 48 34.13908232376228 38.0 33.0 40.0 20.0 41.0 49 34.01167604693313 38.0 33.0 40.0 19.0 41.0 50 33.85057076536615 37.0 33.0 40.0 18.0 41.0 51 32.031008935101276 35.0 30.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 8.0 10 0.0 11 3.0 12 3.0 13 1.0 14 4.0 15 8.0 16 10.0 17 29.0 18 63.0 19 98.0 20 214.0 21 396.0 22 686.0 23 1124.0 24 1709.0 25 2390.0 26 2847.0 27 3020.0 28 2892.0 29 3026.0 30 3551.0 31 4295.0 32 5645.0 33 8451.0 34 11463.0 35 14526.0 36 16479.0 37 27337.0 38 28744.0 39 18213.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.28357022480842 19.800947565900344 25.16200833094852 16.753473878342714 2 35.90638812044898 24.661515469490286 24.329549429234635 15.102546980826098 3 30.136411332633788 22.485293650036567 32.016916277147125 15.361378740182518 4 27.63331107507393 24.842761296066648 30.76854589971064 16.75538172914878 5 21.130083627460333 36.3617285128303 26.29845146109574 16.20973639861363 6 23.704410315113357 34.8945912429648 28.867054596330565 12.533943845591274 7 44.88282616299406 43.619828929377725 9.078190085535311 2.419154822092912 8 78.12331075709879 5.389042576870489 13.433177525517504 3.054469140513212 9 72.34252281471589 8.241915482209292 14.747686730897644 4.6678749721771755 10 40.66393208051131 24.26150275048491 22.147604057362713 12.92696111164107 11 32.45699386307991 24.173741613405834 28.181500206683836 15.187764316830425 12 28.93573722534898 23.347006264110146 31.43120607968457 16.286050430856307 13 22.064930522433144 27.010079811758718 33.67102292600719 17.253966739800948 14 18.314731787974182 30.000317975134344 33.797577029476294 17.88737320741518 15 17.972590543419503 25.29365003656714 39.76279054977901 16.970968870234348 16 19.996184298387867 23.022035676810074 39.216509268975166 17.765270755826894 17 20.71226430093167 23.587395465674586 33.54446882253808 22.15587141085567 18 21.4900314795383 25.651690037839042 34.40045788419346 18.457820598429205 19 24.402683710133868 24.80396832967662 31.798785334986807 18.99456262520271 20 24.958504244968044 25.274571528506474 32.923781360297625 16.84314286622786 21 24.026201151069987 25.371235969347193 32.472892619797136 18.129670259785684 22 22.241724697128685 25.346433908868327 31.603548602499288 20.808292791503703 23 22.013418550669336 24.769627015167416 32.44300295716875 20.773951476994498 24 21.35012242042672 24.643708861966996 34.59315081560622 19.413017902000064 25 20.135457407230756 26.198607268911573 34.03923813157811 19.626697192279565 26 18.830487455880952 28.582784826226586 33.18579287099749 19.400934846894973 27 20.44007758593278 27.97545231962861 33.362587045693026 18.22188304874559 28 18.574835447867976 27.991987026614517 35.317498171642974 18.11567935387453 29 19.923685967757322 26.31180641673821 35.263442398804415 18.501065216700056 30 19.82320582530446 27.442525994467232 33.88088651467455 18.853381665553755 31 23.74129543069732 26.732805494610325 31.46045979204426 18.065439282648097 32 22.468758943050656 27.528379280740246 32.179719545931505 17.823142230277593 33 22.85223695507011 28.996152500874434 29.902381633756242 18.249228910299216 34 20.4159114757226 28.685172819485516 31.546313078317272 19.35260262647461 35 21.511653788673726 26.911507520111925 31.03055741041051 20.54628128080384 36 22.50246430729117 28.754491398772615 30.855035136252347 17.888009157683868 37 22.133613151451556 28.673725714649112 30.929441317688955 18.26321981621037 38 21.79210785716557 29.082005787147448 28.081020064230977 21.044866291456007 39 22.30213997265414 28.05494610321473 30.445483163216636 19.197430760914497 40 21.492575280613053 27.056504181373015 31.58764984578206 19.86327069223187 41 19.97011033737162 27.374479315717508 31.496708957359537 21.15870138955134 42 20.896689878851475 28.009157683869123 31.027377659067064 20.06677477821234 43 22.58259404114598 26.40592705650418 29.87312792139655 21.138350980953287 44 20.883970873477693 29.15514006804668 29.41079207605965 20.550096982415976 45 20.449616839963113 30.356450125600176 29.07946198607269 20.11447104836402 46 21.479220324970587 29.192025183630637 29.42605488250819 19.902699608890583 47 22.994689815256447 27.675919743076093 29.970428312505966 19.3589621291615 48 21.94346402111355 28.01996883843683 29.90174568348755 20.134821456962065 49 21.08302330757735 27.390378072434736 30.617825686031352 20.908772933956566 50 18.852109765016376 28.90457566218322 31.118318547489586 21.12499602531082 51 20.64167382110719 27.813285001112913 29.041304969951348 22.50373620782855 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 346.0 2 519.0 3 2477.5 4 4436.0 5 3091.0 6 1746.0 7 1548.5 8 1351.0 9 1301.0 10 1251.0 11 1222.0 12 1193.0 13 1153.5 14 1114.0 15 1110.5 16 1107.0 17 1014.0 18 921.0 19 963.0 20 1005.0 21 1040.5 22 1076.0 23 1123.5 24 1171.0 25 1599.5 26 2243.5 27 2459.0 28 2777.5 29 3096.0 30 3524.0 31 3952.0 32 4191.5 33 4431.0 34 4881.5 35 5332.0 36 5891.5 37 6451.0 38 6621.5 39 6792.0 40 7586.0 41 8380.0 42 9415.5 43 10451.0 44 10838.5 45 11226.0 46 11401.5 47 11577.0 48 11387.0 49 11197.0 50 10390.5 51 9584.0 52 8815.0 53 8046.0 54 7407.5 55 6769.0 56 6446.0 57 6123.0 58 5731.0 59 5339.0 60 5197.0 61 5055.0 62 4398.0 63 3741.0 64 3144.0 65 2547.0 66 2187.5 67 1828.0 68 1609.5 69 1391.0 70 1147.0 71 903.0 72 758.0 73 613.0 74 503.5 75 308.5 76 223.0 77 175.0 78 127.0 79 96.0 80 65.0 81 48.5 82 32.0 83 26.0 84 20.0 85 12.0 86 4.0 87 3.5 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 157245.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.30624185188718 #Duplication Level Percentage of deduplicated Percentage of total 1 72.84302253972163 30.088715062482112 2 7.990516073408055 6.601163788991701 3 4.021431210740238 4.983306305446914 4 2.80514841729277 4.634805558205348 5 2.189309028205444 4.521606410378708 6 1.719731494026358 4.262138700753601 7 1.4395245719916245 4.16229450856943 8 1.177792831629511 3.8920156443766096 9 0.9668678408671019 3.594390918630163 >10 4.797388840990269 29.76374447518204 >50 0.0307919694543663 0.8706159178352253 >100 0.01539598472718315 1.0480460427994531 >500 0.001539598472718315 0.5456453305351522 >1k 0.001539598472718315 1.0315113358135393 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1622 1.0315113358135393 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 858 0.5456453305351522 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 319 0.20286813571178736 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 240 0.15262806448535726 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 166 0.10556774460237209 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 162 0.10302394352761614 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 159 0.10111609272154917 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027345861553626505 0.0 2 0.0 0.0 0.0 0.17234252281471588 0.0 3 0.0 0.0 0.0 0.22258259404114597 0.0 4 0.0 0.0 0.0 0.28426977010397786 0.0 5 0.0 0.0 0.0 0.5208432700562816 0.0 6 0.0 0.0 0.0 0.6709275334668829 0.0 7 0.0 0.0 0.0 0.8419981557442208 0.0 8 0.0 0.0 0.0 1.2560017806607524 0.0 9 0.0 0.0 0.0 1.4264364526694013 0.0 10 0.0 0.0 0.0 1.934560717351903 0.0 11 0.0 0.0 0.0 2.5024643072911696 0.0 12 0.0 0.0 0.0 3.043657985945499 0.0 13 0.0 0.0 0.0 3.278959585360425 0.0 14 0.0 0.0 0.0 3.3953384845305097 0.0 15 0.0 0.0 0.0 3.555597952240135 0.0 16 0.0 0.0 0.0 3.8576743298674043 0.0 17 0.0 0.0 0.0 4.239880441349486 0.0 18 0.0 0.0 0.0 4.694584883462113 0.0 19 0.0 0.0 0.0 4.945149289325575 0.0 20 0.0 0.0 0.0 5.188718242233457 0.0 21 0.0 0.0 0.0 5.489522719323349 0.0 22 0.0 0.0 0.0 5.806225953130466 0.0 23 0.0 0.0 0.0 6.134376291773983 0.0 24 0.0 0.0 0.0 6.384940697637445 0.0 25 0.0 0.0 0.0 6.603071639797768 0.0 26 0.0 0.0 0.0 6.814843079271201 0.0 27 0.0 0.0 0.0 7.022162866863812 0.0 28 0.0 0.0 0.0 7.248561162517091 0.0 29 0.0 0.0 0.0 7.469871856020859 0.0 30 0.0 0.0 0.0 7.747146173169258 0.0 31 0.0 0.0 6.359502686889885E-4 8.014881236287323 0.0 32 0.0 0.0 6.359502686889885E-4 8.28643200101752 0.0 33 0.0 0.0 6.359502686889885E-4 8.527457152850648 0.0 34 0.0 0.0 6.359502686889885E-4 8.775477757639353 0.0 35 0.0 0.0 6.359502686889885E-4 9.037489268339217 0.0 36 0.0 0.0 6.359502686889885E-4 9.349740850265508 0.0 37 0.0 0.0 6.359502686889885E-4 9.62637921714522 0.0 38 0.0 0.0 6.359502686889885E-4 9.913192788323952 0.0 39 0.0 0.0 6.359502686889885E-4 10.162485293650036 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAGAA 20 7.014698E-4 45.000004 1 CGGGTAC 20 7.014698E-4 45.000004 6 AGGTAAT 25 3.875405E-5 45.000004 7 TTAATCG 20 7.014698E-4 45.000004 20 CGAAAAG 20 7.014698E-4 45.000004 2 TTAGCGG 25 3.875405E-5 45.000004 2 ATAATGC 20 7.014698E-4 45.000004 32 GACAAAC 20 7.014698E-4 45.000004 12 CCTAATA 20 7.014698E-4 45.000004 28 TACGGGA 20 7.014698E-4 45.000004 4 ACGGGTC 20 7.014698E-4 45.000004 5 ACGGGTA 20 7.014698E-4 45.000004 5 ACGGGCG 20 7.014698E-4 45.000004 5 TACGAAA 20 7.014698E-4 45.000004 20 GAGCGAT 20 7.014698E-4 45.000004 6 GTGTATT 20 7.014698E-4 45.000004 9 GCGATTG 25 3.875405E-5 45.000004 9 CATACGA 20 7.014698E-4 45.000004 18 CGATGCC 20 7.014698E-4 45.000004 18 GGTTAGT 20 7.014698E-4 45.000004 38 >>END_MODULE