SRR3551088_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551088_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367154
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	2152	0.5861300707604983	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	2067	0.5629790224265567	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	1957	0.5330188422296911	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT	710	0.19337934490704173	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	587	0.15987841614145562	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	540	0.1470772482391585	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT	418	0.11384868474808936	No Hit
GAATATGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	398	0.10840137925775015	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	390	0.10622245706161447	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	383	0.10431590013999575	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	378	0.10295407376741095	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATT	70	0.0	45.000004	1
CGAGCAC	35	1.2089004E-7	45.000004	25
TCGCCAC	25	3.8856022E-5	45.0	43
CGTATCG	20	7.0270087E-4	45.0	28
CCGATTC	20	7.0270087E-4	45.0	10
ACCGAAG	25	3.8856022E-5	45.0	32
TGACCGA	25	3.8856022E-5	45.0	30
TCTCGAA	20	7.0270087E-4	45.0	32
TCGTAAG	20	7.0270087E-4	45.0	1
CTCGAAA	20	7.0270087E-4	45.0	33
TTACGAG	20	7.0270087E-4	45.0	25
AACTCGT	20	7.0270087E-4	45.0	7
CGTCATA	25	3.8856022E-5	45.0	38
TCGCGTT	25	3.8856022E-5	45.0	36
TACACGA	20	7.0270087E-4	45.0	26
TACGTGG	20	7.0270087E-4	45.0	2
CGCTTAG	20	7.0270087E-4	45.0	2
TGCGTAG	20	7.0270087E-4	45.0	1
TGGTACG	20	7.0270087E-4	45.0	1
TATGCGG	30	2.1614524E-6	44.999996	2