SRR3551087_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551087_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444015
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	978	0.22026282895848112	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	626	0.14098622794274968	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	602	0.13558100514622254	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	490	0.11035663209576253	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTACA	20	7.0286036E-4	45.000004	34
CGGTCTA	20	7.0286036E-4	45.000004	31
CGTCATT	20	7.0286036E-4	45.000004	28
TATAACG	20	7.0286036E-4	45.000004	1
TAAGACG	20	7.0286036E-4	45.000004	1
ACGGTCT	20	7.0286036E-4	45.000004	30
GCGTACG	35	1.2096825E-7	45.0	1
GCGTTCC	30	2.162482E-6	44.999996	23
ACGTATG	30	2.162482E-6	44.999996	1
CGGTAGG	30	2.162482E-6	44.999996	31
TACGAAT	55	6.002665E-11	40.909092	12
CGGGACC	50	1.0786607E-9	40.5	6
GCGATAT	45	1.9237632E-8	40.0	9
GCACGGG	220	0.0	38.863636	3
TACGCGG	35	6.2396302E-6	38.571426	2
TATAGCG	35	6.2396302E-6	38.571426	1
TATACGG	35	6.2396302E-6	38.571426	2
AGTACGG	35	6.2396302E-6	38.571426	2
CGTTATT	65	9.094947E-12	38.076927	1
TACGGGA	185	0.0	37.7027	4