SRR3551082_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551082_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1104744
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5542	0.5016546819896737	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC	3566	0.32278971417812635	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCG	3178	0.2876684553163448	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGC	2642	0.23915042761037852	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1882	0.17035620922132186	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGC	20	7.0331676E-4	45.0	44
TCGCAAT	20	7.0331676E-4	45.0	16
GATCCGC	20	7.0331676E-4	45.0	9
CGTCTCA	20	7.0331676E-4	45.0	33
GCCGATT	20	7.0331676E-4	45.0	9
AGCGATA	25	3.8907063E-5	45.0	1
TTACGCG	20	7.0331676E-4	45.0	1
GCCTACG	30	2.165425E-6	44.999996	1
CGTTATT	505	0.0	44.108913	1
TACGGGA	510	0.0	43.235294	4
CGTTTTA	260	0.0	41.538464	1
CGTTTTT	2485	0.0	41.287727	1
GCGCTAG	60	3.6379788E-12	41.249996	1
TAGTACG	60	3.6379788E-12	41.249996	1
CTACGGG	255	0.0	40.588234	3
CGGTTTT	615	0.0	40.2439	1
TACGGCT	460	0.0	40.1087	7
TCTACGG	45	1.9281288E-8	40.0	2
CGCACGG	175	0.0	39.857143	2
GCGAACG	80	0.0	39.375	1