SRR3551081_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551081_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299187
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	391	0.13068749644870933	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	322	0.10762499707540768	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	304	0.10160869289106812	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACCT	25	3.8838647E-5	45.000004	8
CAGCCGA	25	3.8838647E-5	45.000004	20
AAGACGG	30	2.160099E-6	45.000004	2
GTTACGG	25	3.8838647E-5	45.000004	2
GTTACAA	30	2.160099E-6	45.000004	9
AGCGCCC	25	3.8838647E-5	45.000004	15
CGGGATA	55	1.8189894E-12	45.000004	6
AACGAGC	25	3.8838647E-5	45.000004	15
AACGACG	25	3.8838647E-5	45.000004	1
CGCAGGA	25	3.8838647E-5	45.000004	4
AGTTATC	25	3.8838647E-5	45.000004	12
TGCACGG	45	3.8198777E-10	45.000004	2
AAGCTAC	55	1.8189894E-12	45.000004	8
AACCGAT	20	7.0249126E-4	45.0	19
CGTGCGT	20	7.0249126E-4	45.0	16
GGTGCGC	20	7.0249126E-4	45.0	9
TTGCACG	20	7.0249126E-4	45.0	1
ACTCAAT	20	7.0249126E-4	45.0	25
CGTTTTA	20	7.0249126E-4	45.0	1
ACGACAC	20	7.0249126E-4	45.0	44