SRR3551080_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551080_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	781277
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1087	0.1391311916260174	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	1062	0.13593130221419547	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	956	0.12236377110807051	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	875	0.11199612941376745	Illumina PCR Primer Index 2 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC	829	0.10610833289601512	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAA	20	7.031898E-4	45.0	18
GTTCGGA	20	7.031898E-4	45.0	9
TGCGACG	20	7.031898E-4	45.0	1
GTATACG	20	7.031898E-4	45.0	1
ATGCACG	45	3.8380676E-10	45.0	1
ACGCGCT	20	7.031898E-4	45.0	21
CGTTATT	95	0.0	40.263157	1
GCGATGC	190	0.0	40.263157	9
TTATGCG	45	1.9268555E-8	40.0	1
ACGGGTA	85	0.0	39.705883	5
ACGGTCT	40	3.4563345E-7	39.375	30
ACGGGTC	110	0.0	38.86364	5
TCGACGT	35	6.24572E-6	38.571426	26
TACAACG	35	6.24572E-6	38.571426	1
TACGGGA	390	0.0	38.076923	4
ACAACGG	95	0.0	37.894737	2
GACGGGT	95	0.0	37.894737	4
AACGTTA	30	1.13958704E-4	37.500004	32
ATGCGGT	30	1.13958704E-4	37.500004	12
TCGAGCG	30	1.13958704E-4	37.500004	1