##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551077_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 527244 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82918345206394 31.0 31.0 34.0 30.0 34.0 2 31.96770944761818 33.0 31.0 34.0 30.0 34.0 3 31.922123343271807 33.0 31.0 34.0 30.0 34.0 4 35.66672356631844 37.0 35.0 37.0 33.0 37.0 5 31.13295931295567 37.0 35.0 37.0 0.0 37.0 6 33.359264401301864 37.0 35.0 37.0 17.0 37.0 7 29.590872537193405 35.0 32.0 37.0 0.0 37.0 8 32.585719325397726 35.0 33.0 37.0 17.0 37.0 9 36.400300430161366 39.0 35.0 39.0 32.0 39.0 10 36.75155905045861 38.0 35.0 39.0 33.0 39.0 11 36.899710570437975 39.0 37.0 39.0 33.0 39.0 12 36.877906623878125 39.0 35.0 39.0 33.0 39.0 13 36.650742350790146 39.0 35.0 39.0 33.0 39.0 14 37.881809939989836 40.0 37.0 41.0 33.0 41.0 15 37.979466812329775 40.0 37.0 41.0 33.0 41.0 16 38.02645644141991 40.0 37.0 41.0 33.0 41.0 17 37.97760050375158 40.0 37.0 41.0 33.0 41.0 18 37.89196463117646 40.0 36.0 41.0 33.0 41.0 19 37.81959396408494 40.0 36.0 41.0 33.0 41.0 20 37.758874449021704 40.0 36.0 41.0 33.0 41.0 21 37.653187139161375 39.0 36.0 41.0 33.0 41.0 22 37.652637109194224 39.0 36.0 41.0 33.0 41.0 23 37.622173035634354 39.0 36.0 41.0 33.0 41.0 24 37.557172770102646 39.0 36.0 41.0 33.0 41.0 25 37.40762531199976 39.0 35.0 41.0 32.0 41.0 26 37.19090591832245 39.0 35.0 41.0 32.0 41.0 27 37.1676491339873 39.0 35.0 41.0 32.0 41.0 28 37.05712725038123 39.0 35.0 41.0 31.0 41.0 29 36.97090151808271 39.0 35.0 41.0 31.0 41.0 30 36.863983279089 39.0 35.0 41.0 31.0 41.0 31 36.74379983461168 39.0 35.0 40.0 31.0 41.0 32 36.562415124686105 39.0 35.0 40.0 30.0 41.0 33 36.4523636115347 39.0 35.0 40.0 30.0 41.0 34 36.267995463201096 39.0 35.0 40.0 30.0 41.0 35 36.076932122508744 39.0 35.0 40.0 29.0 41.0 36 35.97455637238167 38.0 35.0 40.0 29.0 41.0 37 35.90497568488214 38.0 35.0 40.0 29.0 41.0 38 35.72132257550584 38.0 35.0 40.0 27.0 41.0 39 35.68337619773767 38.0 35.0 40.0 27.0 41.0 40 35.40033077664231 38.0 34.0 40.0 26.0 41.0 41 35.17920355660757 38.0 34.0 40.0 25.0 41.0 42 35.100687727124445 38.0 34.0 40.0 24.0 41.0 43 34.912209527277696 38.0 34.0 40.0 24.0 41.0 44 34.64636866422377 38.0 34.0 40.0 23.0 41.0 45 34.50917981048622 38.0 33.0 40.0 23.0 41.0 46 34.29140208328592 38.0 33.0 40.0 22.0 41.0 47 34.1389223964616 37.0 33.0 40.0 22.0 41.0 48 33.98785382100128 37.0 33.0 40.0 21.0 41.0 49 33.81105901631882 37.0 33.0 40.0 20.0 41.0 50 33.60852849913892 37.0 33.0 40.0 20.0 41.0 51 31.42989583570415 35.0 28.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 12.0 9 26.0 10 28.0 11 11.0 12 14.0 13 9.0 14 14.0 15 32.0 16 60.0 17 136.0 18 258.0 19 470.0 20 797.0 21 1231.0 22 1993.0 23 2904.0 24 4137.0 25 5400.0 26 6763.0 27 8120.0 28 9663.0 29 11159.0 30 13464.0 31 16100.0 32 20599.0 33 28620.0 34 39341.0 35 46634.0 36 52655.0 37 78286.0 38 93550.0 39 84751.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.150988915947835 20.37519630379862 24.575149266753154 11.89866551350039 2 31.092245715456222 26.009779153484914 24.948979978909197 17.948995152149667 3 31.350001137993033 25.84173551524531 26.54861885578594 16.259644490975717 4 29.38848047583282 27.079302941332667 25.436230663601673 18.09598591923284 5 21.72087306825682 39.853654095636934 21.019679692893614 17.40579314321263 6 25.513045193496747 36.17641926698075 24.073673669117145 14.236861870405354 7 67.87255995326642 19.764283709250368 7.647692529455052 4.7154638080281615 8 80.85269818148713 6.4154357375332856 8.229586301598502 4.502279779381083 9 75.33684593850286 8.026644210270767 10.241747653837692 6.394762197388686 10 41.465810895903985 26.193754694221273 17.302994439007367 15.037439970867378 11 31.958637746470327 26.662228493828284 23.314632314450236 18.064501445251153 12 29.52105666446655 23.456881443885564 27.776323675565774 19.245738216082117 13 24.6377388837047 26.094180303616543 28.88909119876186 20.378989613916897 14 19.833701284414808 29.617975737988484 28.39937486249251 22.148948115104204 15 19.657312363915 27.274468746917936 33.944056262375675 19.124162626791392 16 22.70353005439607 25.071693561235403 31.426815667888114 20.797960716480414 17 21.869381159387306 25.161595011038536 28.030475453490222 24.93854837608394 18 22.950853874107622 26.901586362291464 28.3648557404162 21.782704023184714 19 24.69672485604388 28.057028624318153 26.145579655719175 21.100666863918793 20 26.434819552237677 27.58646850414609 26.53135929474778 19.447352648868453 21 24.48885146156239 27.675611291925563 27.634264211636356 20.201273034875694 22 23.277457875291134 25.692089431079346 26.303950353157173 24.726502340472344 23 22.97323440380545 27.260433499480317 27.03055890631283 22.73577319040141 24 23.73303442049601 25.05424433469134 28.116583593175076 23.096137651637573 25 21.542966823709705 26.943502439098406 27.56219131938912 23.951339417802764 26 20.754906646637988 29.149312272875555 27.274658412423847 22.821122668062603 27 22.154638080281615 28.447549900994606 26.538566583972507 22.859245434751273 28 19.87523803020992 27.803256177405526 28.38590861157263 23.93559718081192 29 21.669663381660104 27.861104156709228 27.593865458876728 22.875367002753944 30 21.676112008861175 26.461941719583344 27.504722671097255 24.357223600458234 31 23.66228918679018 27.47039321452686 24.87273444553186 23.9945831531511 32 23.61468314480582 27.63198822556539 26.788735386272773 21.964593243356017 33 22.377115718718468 27.303677234828655 26.30584700821631 24.013360038236566 34 22.228986958599815 26.64345160874282 27.726820978522277 23.40074045413509 35 21.59303851727094 26.138182700988537 27.868501111439866 24.400277670300657 36 21.459324335601732 28.01757819908809 27.151565499085812 23.371531966224364 37 22.423394102161428 27.1183740355509 28.335267921493656 22.122963940794016 38 21.257330571803568 26.743784661371205 27.04743913633915 24.951445630486074 39 23.1860391014407 25.139783477858447 28.00069796906176 23.67347945163909 40 23.542041256040847 25.01346625091988 28.84755445296675 22.59693804007253 41 20.285863850513238 26.024952393958017 29.342391757895776 24.346791997632973 42 21.551122440464 25.76700730591529 28.452670869654277 24.22919938396644 43 22.613818270098854 25.010621268331175 28.249728778326542 24.125831683243433 44 21.112615790791363 26.570051057954192 27.29817693515716 25.019156216097294 45 21.91452154979478 25.565582538634864 26.64098595716594 25.87890995440441 46 22.072133585209126 26.95867567957151 26.43121590762531 24.537974827594056 47 21.057043797558624 25.085159812155283 29.54628217675308 24.311514213533016 48 21.220535463656294 24.337688053349112 29.6126651038229 24.829111379171692 49 20.723611838162217 23.903733375818405 30.316324130762982 25.056330655256392 50 20.4671840741668 24.153522847106842 30.01323865231278 25.366054426413577 51 19.96627747304853 24.15390217811867 28.371683698629095 27.508136650203703 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 598.0 1 885.5 2 1173.0 3 1452.0 4 1731.0 5 1414.0 6 1097.0 7 1002.0 8 907.0 9 922.0 10 937.0 11 991.5 12 1046.0 13 1037.0 14 1028.0 15 1039.0 16 1050.0 17 1140.5 18 1231.0 19 1350.5 20 1470.0 21 1693.0 22 1916.0 23 2100.0 24 2284.0 25 2954.0 26 4327.0 27 5030.0 28 6444.5 29 7859.0 30 9225.5 31 10592.0 32 11646.0 33 12700.0 34 13984.5 35 15269.0 36 15762.5 37 16256.0 38 18691.5 39 21127.0 40 23139.0 41 25151.0 42 28057.0 43 30963.0 44 35061.5 45 39160.0 46 42499.5 47 45839.0 48 46761.5 49 47684.0 50 45491.5 51 43299.0 52 38811.5 53 34324.0 54 31050.5 55 27777.0 56 26085.5 57 24394.0 58 24115.0 59 23836.0 60 23432.5 61 23029.0 62 20030.0 63 17031.0 64 14515.0 65 11999.0 66 9985.5 67 7972.0 68 6670.5 69 5369.0 70 4525.5 71 3682.0 72 3114.5 73 2547.0 74 2159.0 75 1354.0 76 937.0 77 800.0 78 663.0 79 566.0 80 469.0 81 311.0 82 153.0 83 125.5 84 98.0 85 86.5 86 75.0 87 60.0 88 45.0 89 36.5 90 28.0 91 19.0 92 10.0 93 11.5 94 13.0 95 6.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 527244.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.70129810006129 #Duplication Level Percentage of deduplicated Percentage of total 1 75.52895484384116 29.985975514414058 2 8.532912272974793 6.775353876220875 3 3.710529089531974 4.419384644773737 4 2.3166325952314595 3.6789328500641116 5 1.6337608717392351 3.2431213696567687 6 1.2228195009024414 2.9128512916737592 7 0.8614441394353091 2.394031540339038 8 0.6547686836019816 2.079613335541359 9 0.5211758480032689 1.8622221933717011 >10 4.923793251447626 38.85351371203805 >50 0.06623982975004238 1.650767565061098 >100 0.024603365335392716 1.6284142036130624 >500 0.002365708205326223 0.5158179032323762 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCG 635 0.12043759625524424 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 546 0.10355736622891867 No Hit GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC 538 0.10204004218160852 TruSeq Adapter, Index 15 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14907708764822358 0.0 2 0.0 0.0 0.0 0.7239532360728619 0.0 3 0.0 0.0 0.0 0.9815189931037622 0.0 4 0.0 0.0 0.0 1.2876391196485877 0.0 5 0.0 0.0 0.0 2.331178733186153 0.0 6 0.0 0.0 0.0 2.9223661151193756 0.0 7 0.0 0.0 0.0 3.5729188004036083 0.0 8 0.0 0.0 0.0 4.6058371456100025 0.0 9 0.0 0.0 0.0 4.963546289763373 0.0 10 0.0 0.0 0.0 6.01922449567942 0.0 11 0.0 0.0 0.0 7.128957370780891 0.0 12 0.0 0.0 0.0 8.16965200172975 0.0 13 0.0 0.0 0.0 8.574967187867477 0.0 14 0.0 0.0 0.0 8.739976178012457 0.0 15 0.0 0.0 0.0 9.079477433598106 0.0 16 0.0 0.0 0.0 9.752410648580163 0.0 17 0.0 0.0 0.0 10.51790063044814 0.0 18 0.0 0.0 0.0 11.382206340897193 0.0 19 0.0 0.0 0.0 11.875146990767083 0.0 20 0.0 0.0 0.0 12.340017145761735 0.0 21 0.0 0.0 0.0 12.892892095500375 0.0 22 0.0 0.0 0.0 13.558807686763624 0.0 23 0.0 0.0 0.0 14.201204755293563 0.0 24 0.0 0.0 0.0 14.728474861733845 0.0 25 0.0 0.0 0.0 15.173999135125293 0.0 26 0.0 0.0 0.0 15.592211575665157 0.0 27 0.0 0.0 0.0 15.97268058052818 0.0 28 0.0 0.0 0.0 16.409669906153507 0.0 29 0.0 0.0 0.0 16.826934019163804 0.0 30 0.0 0.0 0.0 17.289907519099316 0.0 31 0.0 0.0 0.0 17.770140580072983 0.0 32 0.0 0.0 0.0 18.226855118313342 0.0 33 0.0 0.0 0.0 18.666689426527377 0.0 34 0.0 0.0 0.0 19.060435016804362 0.0 35 0.0 0.0 0.0 19.52663283034041 0.0 36 0.0 0.0 0.0 19.98467502712217 0.0 37 0.0 0.0 0.0 20.441389565362527 0.0 38 0.0 0.0 0.0 20.885396514706663 0.0 39 0.0 0.0 0.0 21.313281896048128 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 20 7.0298096E-4 45.0 40 CGGAATC 20 7.0298096E-4 45.0 28 CGGGTAT 45 3.8380676E-10 45.0 6 CGAACGT 20 7.0298096E-4 45.0 38 CGACGGT 40 6.8030204E-9 45.0 28 GCGAATG 40 6.8030204E-9 45.0 1 CGTTGAA 20 7.0298096E-4 45.0 32 TACGGGT 35 1.2102464E-7 45.0 4 CACTCGC 20 7.0298096E-4 45.0 22 TGCGACG 20 7.0298096E-4 45.0 1 TCGACCT 20 7.0298096E-4 45.0 23 TATAACG 25 3.8879232E-5 45.0 1 TACGTAG 20 7.0298096E-4 45.0 1 TTTAACG 30 2.1632586E-6 44.999996 1 AAACGAG 30 2.1632586E-6 44.999996 37 TTAACGG 60 3.6379788E-12 41.249996 2 CGGGTTA 55 6.002665E-11 40.909092 6 AATGGGC 145 0.0 40.344826 4 ACCGGGT 45 1.9248546E-8 40.0 4 TACGAAT 40 3.4534787E-7 39.375 12 >>END_MODULE