SRR3551068_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551068_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	809957
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3995	0.49323606067976444	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCG	1603	0.19791174099365766	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1329	0.1640827846416538	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGC	1298	0.16025542096679204	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC	1238	0.15284762030576932	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	828	0.10222764912211389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTC	25	3.8897815E-5	45.0	18
CGTTGCT	20	7.032051E-4	45.0	16
CGAGCAT	35	1.2113378E-7	45.0	22
CGGTCTA	45	3.8380676E-10	45.0	31
TATCGCG	20	7.032051E-4	45.0	1
TAATGCG	25	3.8897815E-5	45.0	1
CGTTATT	350	0.0	42.42857	1
CGTGCGG	55	6.002665E-11	40.909092	2
CGTTTTT	1675	0.0	40.701492	1
GTTAGCG	45	1.9270374E-8	40.0	1
TATTACG	45	1.9270374E-8	40.0	1
GCGAGAC	220	0.0	38.863636	21
CCCGATC	35	6.246006E-6	38.571426	41
CACAACG	300	0.0	38.250004	12
CGGTTTT	470	0.0	37.81915	1
CGTTTTA	215	0.0	37.67442	1
TCGCTAT	30	1.1396242E-4	37.500004	23
TCGAACG	30	1.1396242E-4	37.500004	1
ACGGGTC	90	0.0	37.5	5
CGCACGG	85	0.0	37.058823	2