SRR3551067_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551067_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526330
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	565	0.10734710162825604	No Hit
GCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC	557	0.10582714266714797	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0297957E-4	45.000004	1
GTCGATC	20	7.0297957E-4	45.000004	40
CGATTGT	30	2.1632513E-6	45.000004	10
TCGATTG	20	7.0297957E-4	45.000004	1
AAGCCGT	20	7.0297957E-4	45.000004	28
CGGTCTA	30	2.1632513E-6	45.000004	31
ATAACGG	30	2.1632513E-6	45.000004	2
AAAGCGT	20	7.0297957E-4	45.000004	18
TGCGTAG	20	7.0297957E-4	45.000004	2
TTCACGG	25	3.887913E-5	45.0	2
TAAACCG	25	3.887913E-5	45.0	9
ATTGTCG	25	3.887913E-5	45.0	38
TCGTAAG	35	1.2102464E-7	45.0	1
GACGAAC	25	3.887913E-5	45.0	10
AGTACGG	60	3.6379788E-12	41.250004	2
AGGCGAT	110	0.0	40.909092	7
GCGATAT	45	1.9248546E-8	40.0	9
TCCAATA	40	3.4534605E-7	39.375004	11
CGAAGCC	40	3.4534605E-7	39.375004	17
CGAGGTT	35	6.2418367E-6	38.571426	35