##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551067_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 526330 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.889022096403398 31.0 31.0 34.0 30.0 34.0 2 32.02204320483347 33.0 31.0 34.0 30.0 34.0 3 31.97717591625026 33.0 31.0 34.0 30.0 34.0 4 35.7054927516957 37.0 35.0 37.0 35.0 37.0 5 31.11506279330458 37.0 35.0 37.0 0.0 37.0 6 33.36807326202192 37.0 35.0 37.0 17.0 37.0 7 29.629441605076664 35.0 32.0 37.0 0.0 37.0 8 32.64489958771113 35.0 33.0 37.0 17.0 37.0 9 36.4314156517774 39.0 35.0 39.0 32.0 39.0 10 36.78831531548648 38.0 35.0 39.0 33.0 39.0 11 36.96052856572872 39.0 37.0 39.0 33.0 39.0 12 36.952159291699125 39.0 37.0 39.0 33.0 39.0 13 36.74328083141755 39.0 35.0 39.0 33.0 39.0 14 37.97752170691391 40.0 37.0 41.0 33.0 41.0 15 38.08564018771493 40.0 37.0 41.0 33.0 41.0 16 38.12975889650979 40.0 37.0 41.0 33.0 41.0 17 38.11212737256094 40.0 37.0 41.0 33.0 41.0 18 38.03176904223586 40.0 37.0 41.0 33.0 41.0 19 37.94950506336329 40.0 37.0 41.0 33.0 41.0 20 37.88688085421693 40.0 36.0 41.0 33.0 41.0 21 37.79277259513993 40.0 36.0 41.0 33.0 41.0 22 37.77056029487204 40.0 36.0 41.0 33.0 41.0 23 37.72961260045979 39.0 36.0 41.0 33.0 41.0 24 37.691543328330134 40.0 36.0 41.0 33.0 41.0 25 37.54533657591245 39.0 36.0 41.0 33.0 41.0 26 37.38384093629472 39.0 36.0 41.0 32.0 41.0 27 37.326960272072654 39.0 36.0 41.0 32.0 41.0 28 37.21886649060475 39.0 35.0 41.0 32.0 41.0 29 37.16575722455494 39.0 35.0 41.0 32.0 41.0 30 37.0056257481048 39.0 35.0 41.0 31.0 41.0 31 36.887260843957215 39.0 35.0 41.0 31.0 41.0 32 36.74760891455931 39.0 35.0 41.0 31.0 41.0 33 36.62038644956586 39.0 35.0 41.0 30.0 41.0 34 36.521655615298386 39.0 35.0 40.0 30.0 41.0 35 36.370847187125946 39.0 35.0 41.0 30.0 41.0 36 36.23448976877624 39.0 35.0 40.0 30.0 41.0 37 36.10421028632227 39.0 35.0 40.0 29.0 41.0 38 35.99584481219007 39.0 35.0 40.0 29.0 41.0 39 36.04122888682006 39.0 35.0 40.0 29.0 41.0 40 35.897645963558986 39.0 35.0 40.0 28.0 41.0 41 35.76098645336576 38.0 35.0 40.0 27.0 41.0 42 35.67084718712595 38.0 35.0 40.0 27.0 41.0 43 35.491324834229474 38.0 34.0 40.0 26.0 41.0 44 35.338795052533584 38.0 34.0 40.0 26.0 41.0 45 35.2216727148367 38.0 34.0 40.0 26.0 41.0 46 35.093141185188 38.0 34.0 40.0 25.0 41.0 47 34.91447190925845 38.0 34.0 40.0 24.0 41.0 48 34.78701575057473 38.0 34.0 40.0 23.0 41.0 49 34.6327855147911 38.0 34.0 40.0 24.0 41.0 50 34.45877491307735 37.0 33.0 40.0 23.0 41.0 51 32.394887238044575 35.0 30.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 26.0 10 25.0 11 15.0 12 18.0 13 11.0 14 18.0 15 30.0 16 40.0 17 104.0 18 242.0 19 425.0 20 680.0 21 1221.0 22 1742.0 23 2676.0 24 3587.0 25 4681.0 26 5754.0 27 6875.0 28 7963.0 29 9655.0 30 11563.0 31 14674.0 32 19270.0 33 26627.0 34 38314.0 35 45810.0 36 51950.0 37 79795.0 38 98822.0 39 93700.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.55119411775882 19.512093173484317 25.739745026884275 11.19696768187259 2 30.82286778256987 25.558299925902002 25.497881557197953 18.120950734330172 3 32.50869226530884 24.93777668002964 26.277620504246386 16.275910550415137 4 29.079474854178937 26.49763456386677 25.63315790473657 18.789732677217717 5 22.363726179393158 39.749776756027586 20.840537305492752 17.045959759086504 6 26.108335074952976 36.514544107309106 23.323960253073167 14.053160564664754 7 69.47200425588508 19.69866813596033 6.572492542701347 4.256835065453233 8 82.53092166511505 6.026637280793419 7.214865198639636 4.227575855451902 9 75.61320844337203 8.93906864514658 9.715197689662379 5.732525221819011 10 40.0182395075333 29.018866490604754 17.417779719947564 13.545114281914389 11 31.65865521630916 26.38040772899132 23.911804381281705 18.049132673417816 12 29.441415081792794 23.77234814660004 28.167879467254387 18.61835730435278 13 25.00237493587673 25.177170216404154 29.50525335815933 20.31520148955978 14 20.121786711758784 29.354207436399214 28.571998556038984 21.952007295803014 15 19.426975471662264 27.683582543271328 33.65702126042597 19.232420724640434 16 21.758592518002015 26.637090798548442 31.64953546254251 19.954781220907037 17 22.069994110159026 25.390154465829422 28.39359337297893 24.14625805103262 18 22.98652936370718 27.334751961697034 29.09543442327057 20.583284251325214 19 25.227708851860996 27.744000911975377 26.850835027454256 20.177455208709365 20 27.44912887352042 27.068949138373267 26.880664222066002 18.601257766040316 21 25.609218551099122 27.561795831512548 26.904983565443736 19.924002051944598 22 22.923831056561472 25.838922349096578 27.573385518591 23.663861075750955 23 22.293998062052324 28.06015237588585 28.480421028632225 21.165428533429598 24 22.99925902000646 25.92973989702278 29.12089373586913 21.95010734710163 25 22.166131514449113 27.539946421446622 27.318792392605403 22.97512967149887 26 21.418881690194365 28.615697376170846 27.815628978017592 22.1497919556172 27 22.58754013641632 28.053312560560865 28.244447399920205 21.114699903102615 28 20.518685995478123 28.454581726293387 29.818364904147586 21.2083673740809 29 22.305587749130773 27.122147702012043 28.736724108449074 21.835540440408106 30 22.47753310660612 26.54437330192085 28.669655919290175 22.30843767218285 31 23.885015104592174 27.505937339691826 26.043356829365607 22.565690726350386 32 23.381718693595275 28.497140577204416 27.061159348697583 21.059981380502727 33 22.5208519369977 28.323295271027682 26.8179659149203 22.33788687705432 34 21.928067942165562 27.493017688522407 27.87680732620219 22.702107043109837 35 22.81762392415405 26.088005623848154 27.94843539224441 23.145935059753388 36 23.236942602549732 28.75344365702126 27.116827845648167 20.89278589478084 37 22.633518894989834 28.97497767560276 27.756350578534377 20.635152850873027 38 21.77170216404157 28.60999753006669 26.20067258184029 23.417627724051453 39 22.27309862633709 27.304352782474872 27.254764121368723 23.167784469819313 40 22.784944806490227 25.17926015997568 29.268899739707027 22.766895293827066 41 20.468717344631695 27.020500446487944 28.689415385784585 23.821366823095776 42 21.843330230083787 27.37959075104972 28.337734881158212 22.439344137708282 43 22.430034389071494 26.532973609712542 28.3668040962894 22.670187904926568 44 21.599186821955808 26.93424277544506 27.280223433967283 24.18634696863185 45 21.342883742138962 27.18218608097581 26.752227689852376 24.722702487032848 46 22.31831740543005 27.29352307487698 26.664830049588662 23.723329470104307 47 22.015085592688997 26.26413086846655 28.866680599623812 22.854102939220642 48 20.971443771018183 25.953109266049818 29.446164953546255 23.629282009385747 49 20.91444530997663 25.73005528850721 29.63976972621739 23.715729675298768 50 19.39201641555678 26.39427735451143 29.55085212699257 24.66285410293922 51 20.19683468546349 25.601048771683168 27.933235802633327 26.268880740220013 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 257.0 1 640.0 2 1023.0 3 1415.5 4 1808.0 5 1492.5 6 1177.0 7 1018.0 8 859.0 9 866.0 10 873.0 11 871.5 12 870.0 13 923.5 14 977.0 15 958.0 16 939.0 17 1068.0 18 1197.0 19 1329.5 20 1462.0 21 2084.5 22 2707.0 23 2934.0 24 3161.0 25 3669.5 26 5257.5 27 6337.0 28 7370.0 29 8403.0 30 9647.5 31 10892.0 32 12544.0 33 14196.0 34 15525.5 35 16855.0 36 18260.0 37 19665.0 38 20888.5 39 22112.0 40 24574.0 41 27036.0 42 29870.5 43 32705.0 44 36086.0 45 39467.0 46 42594.0 47 45721.0 48 45407.5 49 45094.0 50 42926.0 51 40758.0 52 37093.5 53 33429.0 54 30481.0 55 27533.0 56 26154.5 57 24776.0 58 23913.5 59 23051.0 60 22080.0 61 21109.0 62 18677.5 63 16246.0 64 13148.5 65 10051.0 66 8434.0 67 6817.0 68 5678.5 69 4540.0 70 3800.5 71 3061.0 72 2546.0 73 2031.0 74 1581.5 75 927.0 76 722.0 77 619.5 78 517.0 79 404.0 80 291.0 81 216.0 82 141.0 83 107.0 84 73.0 85 51.5 86 30.0 87 26.5 88 23.0 89 14.5 90 6.0 91 6.0 92 6.0 93 7.0 94 8.0 95 5.5 96 3.0 97 2.5 98 2.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 526330.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.120406925980205 #Duplication Level Percentage of deduplicated Percentage of total 1 73.76054751780138 26.642609914260845 2 8.921162440878376 6.444720352345954 3 3.8176159280376813 4.136815224234739 4 2.4692403254337165 3.567598614108225 5 1.67846516204937 3.0313422332152276 6 1.3185981601755328 2.8576981270433444 7 0.9948045761696278 2.5152922272151956 8 0.7750041544778352 2.2394772343251703 9 0.597786531989565 1.9433063511300215 >10 5.513846420436527 41.711345229882106 >50 0.12569488976745938 2.854619668948811 >100 0.026186435368211955 1.8429227842870524 >500 0.0010474574147284782 0.2122520390032922 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 565 0.10734710162825604 No Hit GCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC 557 0.10582714266714797 TruSeq Adapter, Index 16 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10335720935534741 0.0 2 0.0 0.0 0.0 0.5065263237892577 0.0 3 0.0 0.0 0.0 0.6832215530180685 0.0 4 0.0 0.0 0.0 0.9269849714057721 0.0 5 0.0 0.0 0.0 1.7129937491687723 0.0 6 0.0 0.0 0.0 2.175821252826174 0.0 7 0.0 0.0 0.0 2.661258146030057 0.0 8 0.0 0.0 0.0 3.545494271654665 0.0 9 0.0 0.0 0.0 3.875325366215112 0.0 10 0.0 0.0 0.0 4.760701461060552 0.0 11 0.0 0.0 0.0 5.78990367260084 0.0 12 0.0 0.0 0.0 6.636330819067886 0.0 13 0.0 0.0 0.0 6.97281173408318 0.0 14 0.0 0.0 0.0 7.120627743050938 0.0 15 0.0 0.0 0.0 7.396880284232326 0.0 16 0.0 0.0 0.0 7.9856743867915565 0.0 17 0.0 0.0 0.0 8.662436114224915 0.0 18 0.0 0.0 0.0 9.440845097182375 0.0 19 0.0 0.0 0.0 9.898732734216177 0.0 20 0.0 0.0 0.0 10.34598065852222 0.0 21 0.0 0.0 0.0 10.882146182053084 0.0 22 0.0 0.0 0.0 11.467140387209545 0.0 23 0.0 0.0 0.0 12.06562422814584 0.0 24 0.0 0.0 0.0 12.512492162711606 0.0 25 0.0 0.0 0.0 12.903311610586513 0.0 26 0.0 0.0 0.0 13.280641422681587 0.0 27 0.0 0.0 0.0 13.657401250166245 0.0 28 0.0 0.0 0.0 14.071210077327912 0.0 29 0.0 0.0 0.0 14.486348868580547 0.0 30 0.0 0.0 0.0 14.944426500484488 0.0 31 0.0 0.0 0.0 15.38407462998499 0.0 32 0.0 0.0 0.0 15.813843026238292 0.0 33 0.0 0.0 0.0 16.22860182775065 0.0 34 0.0 0.0 0.0 16.663310090627554 0.0 35 0.0 0.0 0.0 17.110938004673873 0.0 36 0.0 0.0 0.0 17.555905990538257 0.0 37 0.0 0.0 0.0 17.992324207246405 0.0 38 0.0 0.0 0.0 18.435962229019818 0.0 39 0.0 0.0 0.0 18.87048049702658 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 7.0297957E-4 45.000004 1 GTCGATC 20 7.0297957E-4 45.000004 40 CGATTGT 30 2.1632513E-6 45.000004 10 TCGATTG 20 7.0297957E-4 45.000004 1 AAGCCGT 20 7.0297957E-4 45.000004 28 CGGTCTA 30 2.1632513E-6 45.000004 31 ATAACGG 30 2.1632513E-6 45.000004 2 AAAGCGT 20 7.0297957E-4 45.000004 18 TGCGTAG 20 7.0297957E-4 45.000004 2 TTCACGG 25 3.887913E-5 45.0 2 TAAACCG 25 3.887913E-5 45.0 9 ATTGTCG 25 3.887913E-5 45.0 38 TCGTAAG 35 1.2102464E-7 45.0 1 GACGAAC 25 3.887913E-5 45.0 10 AGTACGG 60 3.6379788E-12 41.250004 2 AGGCGAT 110 0.0 40.909092 7 GCGATAT 45 1.9248546E-8 40.0 9 TCCAATA 40 3.4534605E-7 39.375004 11 CGAAGCC 40 3.4534605E-7 39.375004 17 CGAGGTT 35 6.2418367E-6 38.571426 35 >>END_MODULE