##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 347879 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76046268961334 31.0 31.0 34.0 30.0 34.0 2 31.898159992411156 31.0 31.0 34.0 30.0 34.0 3 31.840194435421513 33.0 31.0 34.0 30.0 34.0 4 35.59483038642747 37.0 35.0 37.0 33.0 37.0 5 31.011877693105937 37.0 35.0 37.0 0.0 37.0 6 33.271350095866666 37.0 35.0 37.0 17.0 37.0 7 29.62786486105801 35.0 32.0 37.0 0.0 37.0 8 32.589992497391336 35.0 33.0 37.0 17.0 37.0 9 36.32970659338448 39.0 35.0 39.0 32.0 39.0 10 36.70002788325826 38.0 35.0 39.0 33.0 39.0 11 36.844135460893014 39.0 37.0 39.0 33.0 39.0 12 36.825706639377486 39.0 35.0 39.0 33.0 39.0 13 36.50374124336335 39.0 35.0 39.0 32.0 39.0 14 37.707973174580815 40.0 36.0 41.0 33.0 41.0 15 37.83062214160671 40.0 36.0 41.0 33.0 41.0 16 37.915740817928075 40.0 36.0 41.0 33.0 41.0 17 37.86956384260044 40.0 36.0 41.0 33.0 41.0 18 37.79766815473196 40.0 36.0 41.0 33.0 41.0 19 37.72343544738257 39.0 36.0 41.0 33.0 41.0 20 37.652948295240584 39.0 36.0 41.0 33.0 41.0 21 37.55607553200969 39.0 36.0 41.0 33.0 41.0 22 37.526878598593186 39.0 36.0 41.0 33.0 41.0 23 37.48832496356492 39.0 35.0 41.0 33.0 41.0 24 37.42373066497259 39.0 35.0 41.0 32.0 41.0 25 37.32422480230195 39.0 35.0 41.0 32.0 41.0 26 37.14293188148753 39.0 35.0 41.0 32.0 41.0 27 37.12364931484798 39.0 35.0 41.0 32.0 41.0 28 36.992764725666106 39.0 35.0 41.0 31.0 41.0 29 36.97548572923344 39.0 35.0 41.0 31.0 41.0 30 36.888903900494135 39.0 35.0 40.0 31.0 41.0 31 36.74458073065635 39.0 35.0 40.0 31.0 41.0 32 36.698280149132316 39.0 35.0 40.0 31.0 41.0 33 36.541699843911246 39.0 35.0 40.0 30.0 41.0 34 36.39035986650531 39.0 35.0 40.0 30.0 41.0 35 36.32991931102481 39.0 35.0 40.0 30.0 41.0 36 36.172399023798505 38.0 35.0 40.0 30.0 41.0 37 36.03117463255902 38.0 35.0 40.0 29.0 41.0 38 35.933356138197475 38.0 35.0 40.0 29.0 41.0 39 35.8811253338086 38.0 35.0 40.0 29.0 41.0 40 35.67918730363144 38.0 35.0 40.0 27.0 41.0 41 35.54963938610839 38.0 35.0 40.0 27.0 41.0 42 35.46453220803785 38.0 34.0 40.0 27.0 41.0 43 35.25290977610031 38.0 34.0 40.0 26.0 41.0 44 34.99500401001497 38.0 34.0 40.0 24.0 41.0 45 34.88790642723475 38.0 34.0 40.0 24.0 41.0 46 34.683746360084974 38.0 34.0 40.0 23.0 41.0 47 34.46935284969774 37.0 33.0 40.0 23.0 41.0 48 34.3807875726905 37.0 33.0 40.0 23.0 41.0 49 34.17326714173606 37.0 33.0 40.0 22.0 41.0 50 33.99270723441197 37.0 33.0 40.0 22.0 41.0 51 31.83516682524671 35.0 29.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 10.0 10 17.0 11 8.0 12 2.0 13 5.0 14 10.0 15 22.0 16 24.0 17 100.0 18 173.0 19 305.0 20 521.0 21 801.0 22 1133.0 23 1692.0 24 2465.0 25 3233.0 26 4000.0 27 4822.0 28 5817.0 29 6934.0 30 8680.0 31 10918.0 32 14012.0 33 19421.0 34 26955.0 35 32335.0 36 34608.0 37 51080.0 38 61894.0 39 55871.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.87295295203217 20.562321956772326 26.024278556624576 10.540446534570929 2 30.963064743775853 27.14363327478807 25.331796400472577 16.561505580963495 3 32.403220660057094 26.389635476703106 25.37031554074836 15.836828322491442 4 28.260113430244427 25.940053869305128 26.560384501507706 19.239448198942736 5 22.389394013435705 40.49856415592778 21.155919155798426 15.956122674838092 6 24.877328036472452 37.4785485757979 23.46649265980413 14.177630727925514 7 67.53440132919779 20.006668985480584 8.0237668844627 4.43516280085892 8 79.58313091620937 7.403723708530839 8.13529991750005 4.877845457759738 9 72.72931105355597 9.525438442676908 9.933913803362664 7.811336700404451 10 39.78940953607433 29.61604465920622 16.822515874772552 13.772029929946909 11 30.608056249443056 26.36893862521164 25.079984707326396 17.94302041801891 12 29.333762601364267 23.730090060049616 28.72291802609528 18.213229312490835 13 23.62430615242656 28.07844106715266 30.632202576183097 17.66505020423768 14 18.528568841464992 31.361766591257307 29.11615820443315 20.993506362844553 15 17.930372342107457 27.567056361551 35.784281316204776 18.71828998013677 16 20.44676453594497 25.925681055769388 32.86861236234438 20.75894204594126 17 19.80171266446092 25.405097749504858 29.96587894066615 24.827310645368073 18 21.130623003975522 26.595454166534914 30.45254240698634 21.821380422503225 19 23.50069995601919 28.016063056407543 27.139033974456634 21.34420301311663 20 25.520080257790784 27.643519729561138 28.17387654902998 18.662523463618097 21 23.36990735284395 28.644729920460847 27.5825790001696 20.402783726525602 22 21.0972780765726 26.73170843885374 27.254591395283995 24.916422089289668 23 20.393297669592016 29.390966399236518 27.64840648616329 22.567329445008177 24 21.787173126288163 26.342492648305875 29.859232664230955 22.011101561175007 25 19.943428605923323 29.41626255105942 27.835253062127922 22.805055780889333 26 19.600493274960545 30.24988573613239 27.416429275696437 22.733191713210626 27 21.180927851350614 29.66404985641559 27.09102877724726 22.06399351498653 28 18.348621215997515 29.574650956223287 30.63306494499524 21.443662882783958 29 18.910885681515698 28.900278545126323 28.625470350322956 23.56336542303502 30 20.213350044124535 28.46880668278338 27.77891163306782 23.53893164002426 31 22.58773884022893 29.440983790340898 25.28724067851178 22.684036690918393 32 21.679089568499393 29.468867048600234 25.12367806047505 23.728365322425326 33 21.666728948858655 27.715958709781276 25.581020987182324 25.03629135417775 34 18.85885609651632 28.8416374659005 28.79162007479612 23.507886362787062 35 20.271128754538214 26.566133626922007 27.928676350110237 25.234061268429542 36 22.356336542303502 28.26557509938801 27.038999192247882 22.339089166060614 37 20.317121757852586 29.016985791036536 27.937012581960968 22.728879869149907 38 19.94141641202832 29.044869049295873 26.36663897504592 24.647075563629883 39 22.003340241865708 26.152484053363384 28.356698737204606 23.48747696756631 40 21.726519853167336 25.513181307293625 30.543953501073652 22.216345338465384 41 19.23801091758916 26.247057166428554 30.02337019480911 24.491561721173166 42 20.652870682047496 26.26401708640073 29.50882347022959 23.574288761322183 43 22.587451383958214 25.51979280152007 27.581716631357455 24.31103918316426 44 20.4959195582372 26.97575881269062 27.19595031605817 25.332371313014008 45 19.64131206540205 27.386246367271376 26.789487149267416 26.18295441805915 46 21.938662580954873 27.991629273396786 26.907919132801922 23.16178901284642 47 19.810911265123792 26.67996631012507 30.96565185021229 22.543470574538848 48 21.053872179694665 25.723886753727587 28.7505138280839 24.47172723849384 49 20.689952540969706 24.494436283880315 30.21682826500019 24.598782910149794 50 18.661661094805954 26.101316837176146 30.128866646161452 25.10815542185645 51 18.704204622871746 25.86416541383642 27.601838570307493 27.829791392984344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 302.0 1 582.0 2 862.0 3 1168.0 4 1474.0 5 1165.0 6 856.0 7 771.0 8 686.0 9 692.0 10 698.0 11 770.0 12 842.0 13 879.0 14 916.0 15 964.5 16 1013.0 17 1020.0 18 1027.0 19 1232.5 20 1438.0 21 1515.5 22 1593.0 23 1879.0 24 2165.0 25 2666.0 26 3869.5 27 4572.0 28 5283.0 29 5994.0 30 6713.0 31 7432.0 32 8257.5 33 9083.0 34 10032.0 35 10981.0 36 11135.0 37 11289.0 38 13009.5 39 14730.0 40 16825.0 41 18920.0 42 21513.0 43 24106.0 44 26577.5 45 29049.0 46 31787.5 47 34526.0 48 33138.0 49 31750.0 50 30348.5 51 28947.0 52 24778.0 53 20609.0 54 18259.0 55 15909.0 56 14703.0 57 13497.0 58 12592.0 59 11687.0 60 11296.5 61 10906.0 62 9767.5 63 8629.0 64 7169.5 65 5710.0 66 4817.5 67 3925.0 68 3336.5 69 2748.0 70 2401.0 71 2054.0 72 1734.0 73 1414.0 74 1204.0 75 797.0 76 600.0 77 453.5 78 307.0 79 234.5 80 162.0 81 141.5 82 121.0 83 113.5 84 106.0 85 72.0 86 38.0 87 32.0 88 26.0 89 18.0 90 10.0 91 7.5 92 5.0 93 4.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 347879.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.853966925052305 #Duplication Level Percentage of deduplicated Percentage of total 1 74.65577302462228 29.75328708887508 2 9.473687744329691 7.551280760415777 3 3.8927769915900794 4.654278164083068 4 2.4209211931741903 3.8593325264368934 5 1.6299057345237407 3.247910461733112 6 1.178625593073685 2.818374324202728 7 0.7972691417434915 2.2242036603786963 8 0.6301657352973122 2.009168349747228 9 0.5218067849173939 1.8716463312629124 >10 4.682880547626512 36.337971425057596 >50 0.07649612400480056 1.9856646479490445 >100 0.036083077360754987 2.599713608460518 >500 0.0028866461888603983 0.7774118689754154 >1k 7.216615472150996E-4 0.3097567824219469 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG 1077 0.30959040355985845 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC 993 0.28544407681981376 No Hit GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC 642 0.18454692579891283 No Hit GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 544 0.15637621126886073 TruSeq Adapter, Index 20 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 524 0.15062708585456439 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 418 0.12015672115879372 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 360 0.1034842574573343 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 350 0.10060969475018612 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.74912541429635E-4 0.0 0.0 0.14574032925241248 0.0 2 5.74912541429635E-4 0.0 0.0 0.691332331069136 0.0 3 5.74912541429635E-4 0.0 0.0 0.9109489218952567 0.0 4 5.74912541429635E-4 0.0 0.0 1.2533093403166042 0.0 5 5.74912541429635E-4 0.0 0.0 2.408308636048741 0.0 6 5.74912541429635E-4 0.0 0.0 2.92975431112542 0.0 7 5.74912541429635E-4 0.0 0.0 3.58371732700163 0.0 8 5.74912541429635E-4 0.0 0.0 4.682375193673662 0.0 9 5.74912541429635E-4 0.0 0.0 5.107810474331592 0.0 10 5.74912541429635E-4 0.0 0.0 6.526694626579932 0.0 11 5.74912541429635E-4 0.0 0.0 7.755282727615062 0.0 12 5.74912541429635E-4 0.0 0.0 9.152895115830503 0.0 13 5.74912541429635E-4 0.0 0.0 9.561083020245546 0.0 14 5.74912541429635E-4 0.0 0.0 9.742467927066595 0.0 15 5.74912541429635E-4 0.0 0.0 10.14548161860877 0.0 16 5.74912541429635E-4 0.0 0.0 10.832214649346469 0.0 17 5.74912541429635E-4 0.0 0.0 11.684522492015901 0.0 18 5.74912541429635E-4 0.0 0.0 12.646926086369112 0.0 19 5.74912541429635E-4 0.0 0.0 13.153711491639335 0.0 20 5.74912541429635E-4 0.0 0.0 13.694991649395336 0.0 21 5.74912541429635E-4 0.0 0.0 14.313310087702908 0.0 22 5.74912541429635E-4 0.0 0.0 14.948588445982654 0.0 23 5.74912541429635E-4 0.0 0.0 15.630722176388916 0.0 24 5.74912541429635E-4 0.0 0.0 16.182063303619937 0.0 25 5.74912541429635E-4 0.0 0.0 16.667289488586547 0.0 26 5.74912541429635E-4 0.0 0.0 17.126644609188826 0.0 27 5.74912541429635E-4 0.0 0.0 17.552079889846755 0.0 28 5.74912541429635E-4 0.0 0.0 18.01545939823904 0.0 29 5.74912541429635E-4 0.0 0.0 18.46647828699059 0.0 30 5.74912541429635E-4 0.0 0.0 19.01005809491231 0.0 31 5.74912541429635E-4 0.0 0.0 19.50333305545894 0.0 32 5.74912541429635E-4 0.0 0.0 20.02909057459634 0.0 33 5.74912541429635E-4 0.0 0.0 20.515179128375095 0.0 34 5.74912541429635E-4 0.0 0.0 20.997818206905276 0.0 35 5.74912541429635E-4 0.0 0.0 21.5201262507941 0.0 36 5.74912541429635E-4 0.0 0.0 21.98810505951782 0.0 37 5.74912541429635E-4 0.0 0.0 22.459820799760838 0.0 38 5.74912541429635E-4 0.0 0.0 22.9111271447831 0.0 39 5.74912541429635E-4 0.0 0.0 23.39980280499829 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTAGC 25 3.8851773E-5 45.000004 27 CAAACGG 25 3.8851773E-5 45.000004 2 ATTAGGT 20 7.0264953E-4 45.000004 4 CAACGTT 25 3.8851773E-5 45.000004 39 TTTCGTC 20 7.0264953E-4 45.000004 15 CGGTTGC 20 7.0264953E-4 45.000004 45 TTATGAG 25 3.8851773E-5 45.000004 1 TAAACGG 20 7.0264953E-4 45.000004 2 CAATTGC 20 7.0264953E-4 45.000004 36 TTCCGAG 20 7.0264953E-4 45.000004 15 CGATTAC 30 2.1611213E-6 45.000004 10 TCGATTG 20 7.0264953E-4 45.000004 1 TCGATGG 30 2.1611213E-6 45.000004 2 TGACGAA 20 7.0264953E-4 45.000004 1 TCTAGGC 20 7.0264953E-4 45.000004 30 AACGGCT 25 3.8851773E-5 45.000004 7 CGGGCAC 40 6.7921064E-9 45.000004 6 GATATGT 20 7.0264953E-4 45.000004 9 CGAATGT 20 7.0264953E-4 45.000004 44 CGAATAT 50 2.1827873E-11 45.000004 14 >>END_MODULE