SRR3551060_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551060_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543250
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3288	0.6052462034054302	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCG	2134	0.3928209848136217	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGC	2041	0.3757017947537966	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTC	1781	0.32784169351127473	No Hit
GCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	1397	0.2571560055223194	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	758	0.13953060285319835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCGT	20	7.029999E-4	45.0	44
CGTTCGG	25	3.8880808E-5	45.0	2
AATAGCG	20	7.029999E-4	45.0	1
CAATCGA	40	6.8030204E-9	45.0	41
TACCGAA	20	7.029999E-4	45.0	16
ACGCGTG	20	7.029999E-4	45.0	45
CGTTATT	165	0.0	42.272728	1
CATGCGG	70	0.0	41.785713	2
CGATGAA	410	0.0	41.158535	19
CGAAACC	55	6.002665E-11	40.909092	13
CGGTCTA	55	6.002665E-11	40.909092	31
CGTTTTT	1410	0.0	40.372337	1
GCGAAGT	40	3.4537334E-7	39.375	1
GATCGGT	35	6.2422077E-6	38.571426	9
TAAGTAG	35	6.2422077E-6	38.571426	1
ACTTTCG	35	6.2422077E-6	38.571426	14
TACGGCT	345	0.0	38.47826	7
GCGATTG	100	0.0	38.25	9
ACGGCTG	365	0.0	37.60274	8
CGAAAGG	90	0.0	37.500004	2