SRR3551059_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551059_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	894535
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7197	0.8045520857205141	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTC	1724	0.19272582962097629	No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	1478	0.1652255082249437	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCG	1164	0.13012347197147123	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	916	0.10239957072669041	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGC	900	0.10061093193670455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.032447E-4	45.0	1
AACGGCG	20	7.032447E-4	45.0	2
ACGTCAC	20	7.032447E-4	45.0	30
CAATCGT	20	7.032447E-4	45.0	40
TTCGACA	25	3.8901093E-5	45.0	8
CGATAAT	25	3.8901093E-5	45.0	12
CGTTTTT	4315	0.0	43.01854	1
CGTTATT	650	0.0	40.153847	1
GCGTTAG	45	1.9274012E-8	40.0	1
TAGCGCG	40	3.4570803E-7	39.375	1
GCGCTAG	40	3.4570803E-7	39.375	1
AGTCGAG	40	3.4570803E-7	39.375	1
CGTTCGG	35	6.246737E-6	38.571426	2
GTCGTAA	35	6.246737E-6	38.571426	26
CGTCGTA	35	6.246737E-6	38.571426	25
GTATGCG	65	9.094947E-12	38.07692	1
GCGAGAC	125	0.0	37.8	21
CGACGGT	30	1.1397193E-4	37.500004	28
ACGGACG	30	1.1397193E-4	37.500004	1
GCGATCG	30	1.1397193E-4	37.500004	9