SRR3551057_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551057_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	521730
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3130	0.599927165392061	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC	936	0.17940313955494222	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGC	929	0.178061449408698	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC	902	0.17288635884461312	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCG	888	0.17020297855212466	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	852	0.1633028578000115	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTC	717	0.13742740497958714	No Hit
CTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGCT	560	0.10733521169953807	TruSeq Adapter, Index 14 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	45	3.8380676E-10	45.0	9
CGTTATT	140	0.0	45.0	1
TCGTAAT	20	7.029742E-4	45.0	22
ACCGTTG	20	7.029742E-4	45.0	1
CGGTCTA	25	3.8878672E-5	45.0	31
CGCCGGT	45	3.8380676E-10	45.0	28
TATACGG	20	7.029742E-4	45.0	2
TACGTAG	25	3.8878672E-5	45.0	1
TAGTACG	20	7.029742E-4	45.0	1
CGAAGGC	20	7.029742E-4	45.0	22
CTAGCGC	25	3.8878672E-5	45.0	24
TAAACGG	30	2.1632131E-6	44.999996	2
GCTACGA	115	0.0	43.043476	10
TACGGGA	205	0.0	41.707317	4
GTTAGCG	60	3.6379788E-12	41.249996	1
CGGTAGT	60	3.6379788E-12	41.249996	12
TGCGATG	55	6.002665E-11	40.909092	1
TGACGGG	190	0.0	40.263157	3
AAGGGCG	185	0.0	40.135136	5
ACTACGG	45	1.9248546E-8	40.0	2