SRR3551053_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551053_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	828266
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8639	1.0430224106748316	No Hit
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1244	0.15019329539061121	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC	1134	0.13691253775960863	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1059	0.12785747573847048	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCG	994	0.12000975532015079	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC	977	0.11795727459535947	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGC	858	0.10358990952182028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.032145E-4	45.0	4
ATGTCGC	20	7.032145E-4	45.0	27
ACGCTTT	20	7.032145E-4	45.0	5
CCGACCG	25	3.8898586E-5	45.0	15
CGTAAGG	50	2.1827873E-11	45.0	2
ATGCGCG	30	2.1647647E-6	44.999996	1
CGTTTTT	4040	0.0	43.217823	1
CGTTAGG	95	0.0	42.63158	2
CGTTATT	555	0.0	41.756756	1
GCGTTAG	85	0.0	39.705883	1
ATGGGCG	230	0.0	39.130436	5
CGGGTTA	35	6.246177E-6	38.571426	6
CGCTGTT	35	6.246177E-6	38.571426	13
CCGACGG	35	6.246177E-6	38.571426	2
CTTACGG	65	9.094947E-12	38.07692	2
CCGCTCG	30	1.1396469E-4	37.499996	19
ACGGGCG	120	0.0	37.499996	5
TTAACGG	60	1.546141E-10	37.499996	2
TATAGCG	60	1.546141E-10	37.499996	1
GCGTAAG	30	1.1396469E-4	37.499996	1