SRR3551051_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551051_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	730303
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8445	1.1563693425879396	No Hit
GCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	1788	0.24482988567758862	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1042	0.14268050384566405	No Hit
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT	1005	0.13761411359394662	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCC	941	0.12885062775313808	No Hit
CCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	752	0.10297095862950036	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATT	35	1.2111195E-7	45.000004	37
CATACGG	30	2.16441E-6	45.000004	2
AACCGGC	20	7.031596E-4	45.0	36
TCCGCGC	20	7.031596E-4	45.0	13
GATCGGT	20	7.031596E-4	45.0	23
CGTTCTA	20	7.031596E-4	45.0	31
CGTAGCG	25	3.889404E-5	45.0	2
TTACGAA	20	7.031596E-4	45.0	31
CCAACGG	20	7.031596E-4	45.0	2
TTCGACG	20	7.031596E-4	45.0	25
AAGTCGA	20	7.031596E-4	45.0	44
CGTTATT	450	0.0	43.5	1
CGTTTTT	3385	0.0	43.07238	1
CGTAAGG	85	0.0	42.35294	2
CGTATGG	80	0.0	42.1875	2
ACAACGG	60	3.6379788E-12	41.250004	2
TAAGGGA	630	0.0	41.07143	4
CCATCGA	50	1.0804797E-9	40.5	31
ATACGGA	40	3.4559162E-7	39.375	34
ATACGGG	220	0.0	38.863636	3