SRR3551049_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551049_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835948
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23049	2.757228918545173	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC	11754	1.4060683200390456	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG	9026	1.079732232148411	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC	7981	0.9547244565451439	No Hit
GCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	3494	0.41796858177781393	No Hit
GAACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCT	3384	0.4048098685564174	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2769	0.3312406991822458	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCT	2067	0.247264183896606	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTC	1632	0.1952274543392651	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCC	1457	0.1742931378506797	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAACACCGTCGTA	1442	0.17249876786594381	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACACCGT	1426	0.17058477321555887	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTT	1348	0.16125404929493223	No Hit
CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT	1247	0.14917195806437722	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG	1057	0.1264432715910559	No Hit
GAATATGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC	1045	0.12500777560326717	No Hit
CGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTG	980	0.11723217233607833	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC	884	0.1057482044337686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	20	7.0321804E-4	45.000004	24
CCGGGTC	25	3.889889E-5	45.000004	5
TCTTGCG	20	7.0321804E-4	45.000004	1
GGTCGAA	20	7.0321804E-4	45.000004	8
CCCGTCG	40	6.8121153E-9	45.000004	40
TATTACG	25	3.889889E-5	45.000004	1
GAACGTA	20	7.0321804E-4	45.000004	9
CGGTCTA	20	7.0321804E-4	45.000004	31
CCGTTGA	20	7.0321804E-4	45.000004	24
GGCTACG	40	6.8121153E-9	45.000004	1
CGTTTTT	10760	0.0	44.247215	1
CGTTATT	1385	0.0	43.862816	1
CCGATGA	1615	0.0	42.770897	18
TAATACG	475	0.0	42.631577	4
ATTACGG	80	0.0	42.187504	2
CGATGAA	1675	0.0	42.044777	19
GCGAACC	125	0.0	41.399998	33
AATACGG	495	0.0	41.363636	5
GTCGAAT	180	0.0	41.250004	43
GATTACG	55	6.002665E-11	40.909092	1