##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551049_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 835948 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.919015297602243 33.0 31.0 34.0 30.0 34.0 2 32.095738012412255 33.0 31.0 34.0 30.0 34.0 3 31.8843492657438 33.0 31.0 34.0 30.0 34.0 4 35.656921243905124 37.0 35.0 37.0 33.0 37.0 5 31.871910693009614 37.0 35.0 37.0 0.0 37.0 6 33.71162799599975 37.0 35.0 37.0 17.0 37.0 7 35.37693851770684 37.0 35.0 37.0 32.0 37.0 8 35.58505433352314 37.0 35.0 37.0 33.0 37.0 9 37.572511687329836 39.0 37.0 39.0 35.0 39.0 10 37.301632398187444 39.0 37.0 39.0 34.0 39.0 11 37.28213836267328 39.0 37.0 39.0 34.0 39.0 12 37.294414245862185 39.0 37.0 39.0 34.0 39.0 13 37.2228607521042 39.0 37.0 39.0 34.0 39.0 14 38.54285912520874 40.0 38.0 41.0 34.0 41.0 15 38.58991468368846 40.0 38.0 41.0 34.0 41.0 16 38.619769411494495 40.0 38.0 41.0 34.0 41.0 17 38.49777139247896 40.0 38.0 41.0 34.0 41.0 18 38.27889773048084 40.0 38.0 41.0 34.0 41.0 19 37.9683820046223 40.0 37.0 41.0 34.0 41.0 20 37.61403340877662 39.0 35.0 41.0 33.0 41.0 21 37.68286903013106 39.0 35.0 41.0 33.0 41.0 22 37.710071679099656 39.0 35.0 41.0 33.0 41.0 23 37.62767899438721 39.0 35.0 41.0 33.0 41.0 24 37.60593123017221 39.0 35.0 41.0 33.0 41.0 25 37.47829769315795 39.0 35.0 41.0 33.0 41.0 26 37.39115471297258 39.0 35.0 41.0 33.0 41.0 27 37.31828295539914 39.0 35.0 41.0 33.0 41.0 28 37.25349902147023 39.0 35.0 41.0 33.0 41.0 29 37.159585285209126 39.0 35.0 41.0 33.0 41.0 30 36.98750161493299 39.0 35.0 41.0 33.0 41.0 31 36.773749084871305 39.0 35.0 41.0 31.0 41.0 32 36.27151210362367 39.0 35.0 41.0 30.0 41.0 33 35.79950188289224 39.0 35.0 41.0 25.0 41.0 34 35.32095178168977 39.0 35.0 41.0 22.0 41.0 35 35.006130764114516 39.0 35.0 41.0 19.0 41.0 36 34.82700359352496 39.0 35.0 41.0 18.0 41.0 37 34.63194480996425 39.0 35.0 41.0 16.0 41.0 38 34.49438721068775 39.0 35.0 41.0 15.0 41.0 39 34.3290396053343 39.0 34.0 41.0 15.0 41.0 40 34.27881518946155 39.0 34.0 41.0 15.0 41.0 41 34.166639551742456 38.0 34.0 41.0 15.0 41.0 42 34.12035437610952 38.0 34.0 41.0 15.0 41.0 43 33.98441290606593 38.0 34.0 41.0 12.0 41.0 44 33.99680841392048 38.0 34.0 41.0 12.0 41.0 45 34.037990401316826 38.0 34.0 41.0 13.0 41.0 46 33.858031839301006 38.0 34.0 41.0 12.0 41.0 47 33.731418700684735 38.0 33.0 40.0 12.0 41.0 48 33.71293668984195 38.0 33.0 40.0 12.0 41.0 49 33.70903094450851 38.0 33.0 40.0 12.0 41.0 50 33.58740376195649 38.0 33.0 40.0 11.0 41.0 51 32.736111576318145 37.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 25.0 10 20.0 11 13.0 12 13.0 13 13.0 14 17.0 15 30.0 16 78.0 17 152.0 18 349.0 19 832.0 20 1829.0 21 3322.0 22 5224.0 23 7638.0 24 10682.0 25 15474.0 26 21137.0 27 21948.0 28 19738.0 29 16838.0 30 16310.0 31 17897.0 32 21558.0 33 27920.0 34 41100.0 35 57578.0 36 61021.0 37 85984.0 38 141546.0 39 239461.0 40 188.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69541167632437 17.25896826118371 20.722341581055282 22.323278481436645 2 39.27540947523052 27.09091953087991 19.60564532722131 14.028025666668261 3 25.564269547866616 27.086613042916547 34.25236976462651 13.096747644590334 4 22.568269796685918 20.577117236957324 41.434036566867796 15.420576399488963 5 23.05406556388675 32.2375315210994 30.253317191978446 14.455085723035404 6 19.976122916736447 33.587615497614685 33.99840659945356 12.437854986195314 7 64.54588084426304 4.896357189681655 26.515764138439234 4.041997827616072 8 65.03275323345471 9.699407140157042 20.99209520209391 4.275744424294333 9 60.141898778392914 6.6195504983563564 22.02481494064224 11.213735782608488 10 32.837329594663785 25.818471962370865 28.687430318632263 12.656768124333093 11 25.265566757740913 21.617134080110244 36.60598506127176 16.51131410087709 12 21.11315536373076 18.74351036188854 39.51250556254695 20.63082871183375 13 21.53255944149636 20.594582438142087 41.969835444309936 15.90302267605162 14 16.89016541698766 26.89150521324293 37.876279385799116 18.342049983970295 15 15.266978328795572 23.076315751697475 43.118112609875254 18.538593309631697 16 17.319498342002134 23.583643958715136 37.6241105906109 21.47274710867183 17 17.416274696512225 25.12979276222923 38.18634651916148 19.26758602209707 18 17.534224616842195 23.34403575342007 38.3234363859953 20.79830324374243 19 17.80433711187777 24.712183054448364 36.32678109164685 21.156698742027018 20 20.8218693028753 24.00400503380593 38.88914142984971 16.284984233469068 21 18.57448070932642 27.483288434208824 37.950685927832836 15.991544928631923 22 17.80338011455258 21.756975314253996 39.58679247991502 20.852852091278404 23 18.78442199754052 24.350677314856906 38.26039418719825 18.60450650040433 24 18.074808480910296 24.65117447496734 37.20578313483614 20.068233909286224 25 16.674721394153703 29.364505926205936 35.316790039571835 18.643982640068522 26 16.502461875619055 24.89915640685784 38.75731504830444 19.84106666921866 27 20.280089192150708 25.60769330149722 35.64874848674798 18.46346901960409 28 15.276787551378792 27.52001320656309 38.30728705613268 18.89591218592544 29 17.52872188222234 24.873078229746348 37.94901118251374 19.649188705517567 30 16.337499461689003 30.08656040806366 35.95522688014087 17.620713250106466 31 17.919655289563465 26.856215936876453 33.0199964591099 22.20413231445018 32 20.07588988788776 27.42311722738735 32.35811318407365 20.142879700651235 33 19.10334135616091 27.38746907702393 31.838463636494136 21.670725930321026 34 17.297726652854006 27.206118083899955 31.637972696866314 23.858182566379725 35 19.014938728246257 26.90274993181394 30.44627177767038 23.636039562269424 36 19.217224037858816 31.61141602109222 29.74766373027987 19.42369621076909 37 17.877427782589347 28.25283390832923 32.08847918770067 21.781259121380756 38 17.857211214094658 29.25839884777522 29.65160512376368 23.232784814366443 39 19.830300449310243 26.19540928383105 30.49053290396053 23.48375736289817 40 18.307478455597717 26.824635025145106 32.07663634580141 22.791250173455765 41 18.45736816165599 27.12034719862958 30.106896601223998 24.315388038490433 42 19.088866771617376 25.93020140008709 32.37354476594238 22.60738706235316 43 21.57993080909339 26.502605425217833 30.40356577203367 21.513897993655107 44 19.554326345657863 26.231177058860123 31.44764985381866 22.766846741663358 45 17.992267461612446 25.552307081301706 31.340944652059697 25.11448080502615 46 21.432912095010696 27.459483125744665 29.878413489834294 21.229191289410345 47 17.416872819840467 26.569595237981307 34.77871829348237 21.23481364869585 48 18.828204625168073 26.12184011445688 31.51727140922641 23.532683851148636 49 18.621732452257795 24.150425624560377 34.57906472651409 22.648777196667737 50 18.647691004703642 24.595190131443584 33.19871570958959 23.558403154263182 51 17.95733705924292 24.225310665256693 31.406977467497978 26.410374808002413 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 460.0 1 819.0 2 1178.0 3 19978.0 4 38778.0 5 25278.5 6 11779.0 7 11330.0 8 10881.0 9 10720.0 10 10559.0 11 10209.0 12 9859.0 13 9513.0 14 9167.0 15 8613.0 16 8059.0 17 7735.0 18 7411.0 19 7065.5 20 6720.0 21 6702.0 22 6684.0 23 6729.5 24 6775.0 25 7229.0 26 8409.5 27 9136.0 28 10851.0 29 12566.0 30 13798.0 31 15030.0 32 16582.0 33 18134.0 34 20441.0 35 22748.0 36 24845.0 37 26942.0 38 28683.5 39 30425.0 40 33308.0 41 36191.0 42 40042.5 43 43894.0 44 48787.5 45 53681.0 46 75970.0 47 98259.0 48 83727.0 49 69195.0 50 66416.0 51 63637.0 52 55433.0 53 47229.0 54 41438.0 55 35647.0 56 31782.0 57 27917.0 58 25784.5 59 23652.0 60 21926.0 61 20200.0 62 17887.5 63 15575.0 64 13074.5 65 10574.0 66 8568.5 67 6563.0 68 5409.5 69 4256.0 70 3691.0 71 3126.0 72 2682.0 73 2238.0 74 1800.0 75 1166.5 76 971.0 77 675.0 78 379.0 79 308.0 80 237.0 81 172.5 82 108.0 83 68.5 84 29.0 85 28.5 86 28.0 87 18.5 88 9.0 89 12.0 90 15.0 91 8.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 835948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.63466088610912 #Duplication Level Percentage of deduplicated Percentage of total 1 77.752974543709 29.262068298387632 2 8.762589815658005 6.5955419239272475 3 3.3332373723522184 3.763357744841435 4 1.7903735789426205 2.6952041001182017 5 1.1688130928522742 2.1993942194369853 6 0.8820142710229083 1.9916584791993537 7 0.6674963567211538 1.758469931953976 8 0.5302533043932661 1.596472263566349 9 0.45458038070119106 1.5397180625850937 >10 4.513317415110138 34.06741622043355 >50 0.10834278497478372 2.5848815319484295 >100 0.027326804489427283 2.0813104958919677 >500 0.003536409992749111 0.8895357961746925 >1k 0.003857901810271758 2.706357003378063 >5k 6.429836350452929E-4 2.057716986608133 >10k+ 6.429836350452929E-4 4.210896941548942 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23049 2.757228918545173 No Hit GAATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC 11754 1.4060683200390456 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG 9026 1.079732232148411 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC 7981 0.9547244565451439 No Hit GCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC 3494 0.41796858177781393 No Hit GAACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCT 3384 0.4048098685564174 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2769 0.3312406991822458 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCT 2067 0.247264183896606 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTC 1632 0.1952274543392651 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCC 1457 0.1742931378506797 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAACACCGTCGTA 1442 0.17249876786594381 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACACCGT 1426 0.17058477321555887 No Hit GAATGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTT 1348 0.16125404929493223 No Hit CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT 1247 0.14917195806437722 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG 1057 0.1264432715910559 No Hit GAATATGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC 1045 0.12500777560326717 No Hit CGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTG 980 0.11723217233607833 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC 884 0.1057482044337686 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.588739969471785E-4 0.0 0.0 0.15730643532851327 0.0 2 3.588739969471785E-4 0.0 0.0 0.7873695493021097 0.0 3 4.78498662596238E-4 0.0 0.0 1.0756649935163431 0.0 4 4.78498662596238E-4 0.0 0.0 1.7643441936579787 0.0 5 4.78498662596238E-4 0.0 0.0 3.8598094618325542 0.0 6 4.78498662596238E-4 0.0 0.0 4.761420566829516 0.0 7 4.78498662596238E-4 0.0 0.0 5.659203682525708 0.0 8 4.78498662596238E-4 0.0 0.0 6.729964064750439 0.0 9 4.78498662596238E-4 0.0 0.0 7.151282137166427 0.0 10 4.78498662596238E-4 0.0 0.0 9.138128208931656 0.0 11 4.78498662596238E-4 0.0 0.0 10.25446558876868 0.0 12 4.78498662596238E-4 0.0 0.0 12.191906673620847 0.0 13 4.78498662596238E-4 0.0 0.0 12.679377186140766 0.0 14 5.981233282452976E-4 0.0 0.0 12.902237938244962 0.0 15 5.981233282452976E-4 0.0 0.0 13.343533329824343 0.0 16 5.981233282452976E-4 0.0 0.0 13.872872475321431 0.0 17 5.981233282452976E-4 0.0 0.0 14.467287438931608 0.0 18 5.981233282452976E-4 0.0 0.0 15.11314100877088 0.0 19 5.981233282452976E-4 0.0 0.0 15.745118117394862 0.0 20 5.981233282452976E-4 0.0 0.0 16.174690291740635 0.0 21 5.981233282452976E-4 0.0 0.0 16.642781608425405 0.0 22 5.981233282452976E-4 0.0 0.0 17.212314641580576 0.0 23 5.981233282452976E-4 0.0 0.0 17.71031212467761 0.0 24 5.981233282452976E-4 0.0 0.0 18.10854263662333 0.0 25 5.981233282452976E-4 0.0 0.0 18.48045572212626 0.0 26 5.981233282452976E-4 0.0 0.0 18.82736725250853 0.0 27 5.981233282452976E-4 0.0 0.0 19.19114586074732 0.0 28 7.17747993894357E-4 0.0 0.0 19.54332087641815 0.0 29 7.17747993894357E-4 0.0 0.0 19.93521128108447 0.0 30 7.17747993894357E-4 0.0 0.0 20.38129165928981 0.0 31 8.373726595434166E-4 0.0 0.0 20.771148444640097 0.0 32 8.373726595434166E-4 0.0 0.0 21.1461717714499 0.0 33 9.56997325192476E-4 0.0 0.0 21.501696277758903 0.0 34 0.0010766219908415356 0.0 0.0 21.843822821515214 0.0 35 0.0010766219908415356 0.0 0.0 22.21824802499677 0.0 36 0.0010766219908415356 0.0 0.0 22.5831032552264 0.0 37 0.0010766219908415356 0.0 0.0 22.942216501504877 0.0 38 0.0011962466564905952 0.0 0.0 23.305157737084127 0.0 39 0.0013158713221396547 0.0 0.0 23.66462985735955 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACGA 20 7.0321804E-4 45.000004 24 CCGGGTC 25 3.889889E-5 45.000004 5 TCTTGCG 20 7.0321804E-4 45.000004 1 GGTCGAA 20 7.0321804E-4 45.000004 8 CCCGTCG 40 6.8121153E-9 45.000004 40 TATTACG 25 3.889889E-5 45.000004 1 GAACGTA 20 7.0321804E-4 45.000004 9 CGGTCTA 20 7.0321804E-4 45.000004 31 CCGTTGA 20 7.0321804E-4 45.000004 24 GGCTACG 40 6.8121153E-9 45.000004 1 CGTTTTT 10760 0.0 44.247215 1 CGTTATT 1385 0.0 43.862816 1 CCGATGA 1615 0.0 42.770897 18 TAATACG 475 0.0 42.631577 4 ATTACGG 80 0.0 42.187504 2 CGATGAA 1675 0.0 42.044777 19 GCGAACC 125 0.0 41.399998 33 AATACGG 495 0.0 41.363636 5 GTCGAAT 180 0.0 41.250004 43 GATTACG 55 6.002665E-11 40.909092 1 >>END_MODULE