SRR3551041_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551041_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	688027
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4604	0.669159785880496	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	1034	0.15028479986977256	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	926	0.13458774146944816	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	894	0.12993676120268535	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	810	0.11772793800243304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	85	0.0	45.0	2
CGTATCG	20	7.031311E-4	45.0	2
GTCTCGA	20	7.031311E-4	45.0	10
CTCGCTA	20	7.031311E-4	45.0	42
GTATACG	20	7.031311E-4	45.0	1
TACGTCG	20	7.031311E-4	45.0	1
ACGGGTC	80	0.0	42.1875	5
ACTACGG	65	0.0	41.53846	2
CGTGTAC	115	0.0	41.08696	18
CGTTTTT	2395	0.0	41.05428	1
CTCGAGG	45	1.9263098E-8	40.0	2
GCCGTCA	45	1.9263098E-8	40.0	29
CCCTCGT	120	0.0	39.375004	14
CGAATAT	115	0.0	39.130436	14
CTACGAA	110	0.0	38.863636	11
TCGATGG	70	0.0	38.571426	2
TTTGGCG	100	0.0	38.250004	1
TTAGGCG	30	1.1394454E-4	37.500004	1
TCGCAAG	30	1.1394454E-4	37.500004	1
AGATACG	30	1.1394454E-4	37.500004	1