SRR3551040_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551040_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	992595
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC	22776	2.294591449684917	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG	17731	1.7863277570408878	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC	16439	1.6561638936323473	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12342	1.2434074320342132	No Hit
GAACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCT	6002	0.604677637908714	No Hit
GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	4557	0.4590996327807414	TruSeq Adapter, Index 22 (95% over 24bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCCCCGCTCGAATGC	3775	0.38031624177030915	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCT	3666	0.3693349251205174	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTT	3197	0.32208503971912006	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTC	2941	0.29629405749575605	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTA	2610	0.2629471234491409	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGACGTGCT	2576	0.25952175862260035	No Hit
GAATATGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC	2025	0.2040106992277817	TruSeq Adapter, Index 22 (95% over 21bp)
GAATAATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG	1998	0.2012905565714113	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC	1660	0.167238400354626	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1311	0.13207803787043054	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCGCTCGAATGC	1224	0.12331313375545919	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGACCCGCTCGAATGC	1026	0.10336542094207607	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGCGC	20	7.0328196E-4	45.000004	45
ACGTGCG	25	3.8904196E-5	45.0	1
AATAGCG	25	3.8904196E-5	45.0	1
CGATCGA	25	3.8904196E-5	45.0	41
CGTCTAT	30	2.1652013E-6	44.999996	42
GATGAAT	8295	0.0	43.77939	20
CCGATGA	7815	0.0	43.589252	18
CGATGAA	8020	0.0	43.513092	19
TAATACG	1345	0.0	43.494423	4
ATGAATG	8265	0.0	43.366608	21
CGTTATT	810	0.0	43.333336	1
CGTAAGC	270	0.0	43.333332	43
TGAATGA	8235	0.0	43.30601	22
CGCTCGA	1240	0.0	43.185482	41
CGTTTTT	6285	0.0	42.959427	1
CTCGAAT	1315	0.0	42.946766	43
CGGCGAT	510	0.0	42.794117	31
GCGAGCC	830	0.0	42.560238	33
ACCGATG	7975	0.0	42.545452	17
CCGCTCG	1360	0.0	42.518383	40

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content