SRR3551023_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551023_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	822342
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	10890	1.3242665460355911	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC	7907	0.9615220917817647	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG	7442	0.9049762750777657	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3857	0.46902626887596643	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2553	0.31045477429098844	No Hit
GAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	2190	0.26631255608980203	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT	1557	0.1893372830282291	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACTCGGT	1552	0.18872926349377753	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTC	1276	0.15516658519204907	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	1222	0.14859997421997176	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1077	0.13096740772087526	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	1068	0.12987297255886238	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTA	1001	0.12172551079721089	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	999	0.12148230298343024	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	897	0.10907870448061754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATACG	20	7.0321147E-4	45.0	1
TATAGCG	35	1.211356E-7	45.0	1
CGTCGAC	20	7.0321147E-4	45.0	16
CGATCGA	25	3.8898343E-5	45.0	41
CGACGGT	90	0.0	42.5	28
TTGTGCG	80	0.0	42.1875	1
CGATGAA	1450	0.0	41.896553	19
TTTAGCG	65	0.0	41.53846	1
CCGATGA	1445	0.0	41.107265	18
TACGGCT	1000	0.0	40.95	7
ATCCGGC	55	6.002665E-11	40.909092	6
CGTTTTT	1855	0.0	40.754715	1
TCACGAC	95	0.0	40.263157	25
ACCCGTA	95	0.0	40.263157	39
CACCGAT	1535	0.0	39.429966	16
CCGTAAG	40	3.4566256E-7	39.375	42
CGATCAC	40	3.4566256E-7	39.375	34
TGAATGA	1525	0.0	39.2459	22
GATGAAT	1590	0.0	39.198112	20
ATGAATG	1555	0.0	39.067524	21