##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551023_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 822342 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.07344632768361 33.0 31.0 34.0 30.0 34.0 2 32.20196463271972 33.0 31.0 34.0 30.0 34.0 3 32.25276952897943 34.0 31.0 34.0 30.0 34.0 4 35.82657823630558 37.0 35.0 37.0 35.0 37.0 5 35.821014857565345 37.0 35.0 37.0 35.0 37.0 6 35.82854092336279 37.0 35.0 37.0 35.0 37.0 7 35.97596377176406 37.0 35.0 37.0 35.0 37.0 8 35.568368148531874 37.0 35.0 37.0 33.0 37.0 9 37.37778564149709 39.0 37.0 39.0 34.0 39.0 10 37.12207086589278 39.0 37.0 39.0 33.0 39.0 11 37.08061731007294 39.0 37.0 39.0 34.0 39.0 12 36.9480216260388 39.0 37.0 39.0 33.0 39.0 13 36.89396260923071 39.0 37.0 39.0 33.0 39.0 14 37.982943836019565 40.0 37.0 41.0 33.0 41.0 15 38.1045355825192 40.0 37.0 41.0 33.0 41.0 16 38.2950743121475 40.0 37.0 41.0 34.0 41.0 17 38.19928934676813 40.0 37.0 41.0 33.0 41.0 18 38.185780368751686 40.0 37.0 41.0 34.0 41.0 19 38.16756045538231 40.0 37.0 41.0 34.0 41.0 20 37.86710760243305 40.0 36.0 41.0 33.0 41.0 21 37.94224057630524 40.0 36.0 41.0 33.0 41.0 22 37.92595051693821 40.0 36.0 41.0 33.0 41.0 23 37.85911700971129 40.0 36.0 41.0 33.0 41.0 24 37.82114983790199 40.0 36.0 41.0 33.0 41.0 25 37.83265721561102 40.0 36.0 41.0 33.0 41.0 26 37.61446940567306 40.0 35.0 41.0 33.0 41.0 27 37.52101072303251 40.0 35.0 41.0 33.0 41.0 28 37.50058734687028 40.0 35.0 41.0 33.0 41.0 29 37.465387879981805 40.0 35.0 41.0 33.0 41.0 30 37.33701914775118 40.0 35.0 41.0 32.0 41.0 31 37.35238988158211 40.0 35.0 41.0 32.0 41.0 32 37.18333856230133 40.0 35.0 41.0 32.0 41.0 33 37.104384793674654 40.0 35.0 41.0 32.0 41.0 34 36.966178305376594 40.0 35.0 41.0 31.0 41.0 35 36.8632734312488 40.0 35.0 41.0 31.0 41.0 36 36.75988457357158 40.0 35.0 41.0 31.0 41.0 37 36.62205627342395 39.0 35.0 41.0 31.0 41.0 38 36.56938962134976 39.0 35.0 41.0 30.0 41.0 39 36.493101410362115 39.0 35.0 41.0 30.0 41.0 40 36.38595012780571 39.0 35.0 41.0 30.0 41.0 41 36.356901386527746 39.0 35.0 41.0 30.0 41.0 42 36.266132582307606 39.0 35.0 41.0 30.0 41.0 43 36.17280036773021 39.0 35.0 41.0 30.0 41.0 44 36.161213947481706 39.0 35.0 41.0 30.0 41.0 45 36.08029505971968 39.0 35.0 41.0 30.0 41.0 46 36.027475186722796 39.0 35.0 41.0 29.0 41.0 47 35.89407934898132 38.0 35.0 41.0 29.0 41.0 48 35.866315960999195 38.0 35.0 41.0 29.0 41.0 49 35.8555503671222 38.0 35.0 40.0 29.0 41.0 50 35.69197973592495 38.0 35.0 40.0 29.0 41.0 51 34.729797334928776 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 8.0 9 19.0 10 18.0 11 22.0 12 17.0 13 27.0 14 28.0 15 44.0 16 80.0 17 142.0 18 243.0 19 474.0 20 1179.0 21 2080.0 22 3408.0 23 4521.0 24 5529.0 25 6769.0 26 7853.0 27 8654.0 28 9450.0 29 10309.0 30 12328.0 31 15610.0 32 20444.0 33 28780.0 34 53143.0 35 59868.0 36 58532.0 37 85786.0 38 154202.0 39 272523.0 40 250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.6482315143821 19.428899411680298 21.69012406030581 12.232745013631797 2 31.547823168462756 28.89248025760572 22.853022221897945 16.70667435203358 3 30.070092491931582 29.016759450447626 25.356846664769645 15.556301392851148 4 26.98159646473122 23.705587213105982 31.460997978943066 17.85181834321973 5 28.67322841348247 27.499507504177096 24.37234143458561 19.454922647754827 6 24.69009244329002 36.410763405006676 24.56982617937549 14.329317972327814 7 75.33751164357409 5.679632075219312 13.98992146819693 4.992934813009672 8 75.2970175425796 9.514289675098683 9.886276026276173 5.302416756045538 9 69.80842520508499 6.892752650357151 11.029231147138296 12.269590997419565 10 42.405106391258144 23.990991582577564 18.622787112904362 14.981114913259933 11 32.52296489781624 23.490956317444567 24.376475967419882 19.609602817319317 12 27.993097762244908 20.777729946907733 28.424305216077983 22.804867074769376 13 26.946331331733024 21.87544841440666 31.43351549598585 19.744704757874462 14 20.006882781129992 28.29054091849863 29.427902259643794 22.27467404072758 15 18.69818153517636 24.263019522291213 34.57515243049728 22.463646512035137 16 23.11301137482945 25.138446047994627 28.151790860736774 23.596751716439147 17 22.68070948583436 26.962747859163223 28.402538116744612 21.954004538257806 18 23.72017968193282 24.97099746820666 28.04794112425244 23.26088172560808 19 23.09708126302682 26.75431876275321 26.18460445897206 23.963995515247912 20 25.947841652256603 26.892825612701284 28.397673960469 18.76165877457311 21 23.686252191910423 29.358952844436985 28.32848133744841 18.626313626204183 22 22.26324327347989 22.999311721887 30.615607618241558 24.12183738639155 23 23.47697186815218 25.978850648513635 29.722183714318373 20.821993769015812 24 23.182812017384492 25.696729584528093 28.15908709515019 22.96137130293722 25 22.472280389424352 29.73957307300369 25.76738145443137 22.020765083140592 26 21.851614048656153 24.91165476164418 28.548462805012996 24.688268384686662 27 24.155156856879497 25.275372047153134 27.753659669577864 22.815811426389505 28 19.70190018264907 27.865048848289398 28.66544576344149 23.767605205620047 29 23.696345316182317 25.267711001019038 28.266098533213675 22.769845149584967 30 22.644228313767265 26.6740601842056 30.013425071320693 20.668286430706445 31 23.734407339038988 26.164418210428263 25.95854279606295 24.142631654469795 32 26.90340515260074 25.592393432416195 25.338241267015427 22.165960147967635 33 24.549761534738586 24.142996466190468 27.086297428563782 24.22094457050716 34 23.077867845738147 23.957915319903396 27.77129223607696 25.19292459828149 35 24.69422697612429 24.25535847615712 27.644459361190354 23.40595518652823 36 25.55907396192825 28.26318003944831 25.5056898468034 20.672056151820044 37 22.064177677900435 26.223517709176956 27.94944195967128 23.762862653251325 38 22.503897405215834 26.94280481843321 26.276172200860472 24.277125575490487 39 23.442071546874658 24.062981095456635 26.221815254480497 26.273132103188214 40 24.181423300767808 22.40989758518962 29.889267482385673 23.519411631656904 41 22.55570066955111 24.647652679785296 26.33831179728142 26.45833485338217 42 23.87254937726639 23.96618438557194 29.07208922808272 23.08917700907895 43 24.83905722923066 23.80311354643202 27.100403481763063 24.257425742574256 44 22.880626308762047 23.205430344066095 28.506631061042732 25.40731228612913 45 22.4339751587539 22.512774490418828 27.05893654951346 27.994313801313808 46 24.704441704303076 25.14221576910823 26.603651522116103 23.549691004472592 47 20.729818007592947 24.531885760425713 31.918958292292015 22.819337939689326 48 21.617526527892288 24.840881287834016 28.460786388145078 25.08080579612862 49 22.869073937607467 22.50134372317114 31.136801963173472 23.49278037604792 50 21.59490820121069 23.087839366103154 30.241554000646932 25.07569843203922 51 21.21903052501271 22.55120132499617 28.039428850770115 28.190339299221005 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 334.0 1 726.0 2 1118.0 3 3865.5 4 6613.0 5 4358.5 6 2104.0 7 2048.5 8 1993.0 9 1931.0 10 1869.0 11 1867.5 12 1866.0 13 1772.5 14 1679.0 15 1696.0 16 1713.0 17 1751.0 18 1789.0 19 1786.5 20 1784.0 21 1945.0 22 2106.0 23 2284.5 24 2463.0 25 3375.5 26 5383.5 27 6479.0 28 7668.0 29 8857.0 30 10755.0 31 12653.0 32 14190.5 33 15728.0 34 18107.5 35 20487.0 36 21847.0 37 23207.0 38 25573.5 39 27940.0 40 29701.0 41 31462.0 42 33607.0 43 35752.0 44 38590.0 45 41428.0 46 45405.0 47 49382.0 48 72603.0 49 95824.0 50 85732.0 51 75640.0 52 75220.0 53 74800.0 54 66368.0 55 57936.0 56 53608.5 57 49281.0 58 46045.0 59 42809.0 60 39097.0 61 35385.0 62 31464.5 63 27544.0 64 23872.0 65 20200.0 66 16746.5 67 13293.0 68 11013.0 69 8733.0 70 7632.0 71 6531.0 72 5131.5 73 3732.0 74 3253.5 75 2123.5 76 1472.0 77 1052.5 78 633.0 79 530.0 80 427.0 81 289.0 82 151.0 83 92.0 84 33.0 85 22.5 86 12.0 87 14.0 88 16.0 89 16.0 90 16.0 91 9.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 822342.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.726668956109876 #Duplication Level Percentage of deduplicated Percentage of total 1 71.70320566827277 22.03200663660879 2 9.599256109155247 5.899063293818572 3 3.69942894480971 3.4101338554145655 4 1.951641844495353 2.398698115068015 5 1.4078242681279876 2.1628875117573174 6 1.0761889282790489 1.9840620560076607 7 0.8918583322203966 1.9182685010919072 8 0.7834315003810732 1.9257792289598163 9 0.698548331265309 1.9317656992168915 >10 8.062903016464086 46.568038694893346 >50 0.07887093092187587 1.5890145729528724 >100 0.039235284696620465 2.305098290290268 >500 0.0024021602875481905 0.5126131164286233 >1k 0.0040036004792469845 2.1347193207069592 >5k 8.007200958493968E-4 1.8881926383640364 >10k+ 4.003600479246984E-4 1.3396584684203763 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 10890 1.3242665460355911 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC 7907 0.9615220917817647 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG 7442 0.9049762750777657 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3857 0.46902626887596643 No Hit GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 2553 0.31045477429098844 No Hit GAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT 2190 0.26631255608980203 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT 1557 0.1893372830282291 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACTCGGT 1552 0.18872926349377753 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTC 1276 0.15516658519204907 No Hit CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 1222 0.14859997421997176 No Hit CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG 1077 0.13096740772087526 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT 1068 0.12987297255886238 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTA 1001 0.12172551079721089 No Hit CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT 999 0.12148230298343024 Illumina Single End Adapter 2 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 897 0.10907870448061754 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.864156275612823E-4 0.0 0.0 0.12792731004861724 0.0 2 4.864156275612823E-4 0.0 0.0 0.6847515996993951 0.0 3 4.864156275612823E-4 0.0 0.0 1.0042050631002672 0.0 4 4.864156275612823E-4 0.0 0.0 1.588268627894477 0.0 5 4.864156275612823E-4 0.0 0.0 3.80474303878435 0.0 6 4.864156275612823E-4 0.0 0.0 4.653295101065007 0.0 7 4.864156275612823E-4 0.0 0.0 5.4860386554499225 0.0 8 4.864156275612823E-4 0.0 0.0 6.591661376896717 0.0 9 4.864156275612823E-4 0.0 0.0 7.087318901381663 0.0 10 4.864156275612823E-4 0.0 0.0 8.873558689693583 0.0 11 4.864156275612823E-4 0.0 0.0 9.94233542735261 0.0 12 4.864156275612823E-4 0.0 0.0 11.792782078502619 0.0 13 4.864156275612823E-4 0.0 0.0 12.22958331205265 0.0 14 4.864156275612823E-4 0.0 0.0 12.460144319516697 0.0 15 6.080195344516029E-4 0.0 0.0 12.853654562213775 0.0 16 6.080195344516029E-4 0.0 0.0 13.363782951618669 0.0 17 6.080195344516029E-4 0.0 0.0 13.920120825641886 0.0 18 6.080195344516029E-4 0.0 0.0 14.514642326428664 0.0 19 7.296234413419234E-4 0.0 0.0 15.113663171770382 0.0 20 7.296234413419234E-4 0.0 0.0 15.57162348511933 0.0 21 7.296234413419234E-4 0.0 0.0 16.065578554907813 0.0 22 7.296234413419234E-4 0.0 0.0 16.6637481729013 0.0 23 7.296234413419234E-4 0.0 0.0 17.18749619987791 0.0 24 7.296234413419234E-4 0.0 0.0 17.60484080832549 0.0 25 7.296234413419234E-4 0.0 0.0 17.985947452519756 0.0 26 7.296234413419234E-4 0.0 0.0 18.347232659890896 0.0 27 7.296234413419234E-4 0.0 0.0 18.789870880971662 0.0 28 7.296234413419234E-4 0.0 0.0 19.166478180610987 0.0 29 7.296234413419234E-4 0.0 0.0 19.56156927409764 0.0 30 7.296234413419234E-4 0.0 0.0 20.061361331416855 0.0 31 7.296234413419234E-4 0.0 0.0 20.478705939864437 0.0 32 7.296234413419234E-4 0.0 0.0 20.888632709991708 0.0 33 8.51227348232244E-4 0.0 0.0 21.284818238640373 0.0 34 8.51227348232244E-4 0.0 0.0 21.69036726811959 0.0 35 8.51227348232244E-4 0.0 0.0 22.14832758146854 0.0 36 9.728312551225646E-4 0.0 0.0 22.5445131101172 0.0 37 0.0010944351620128853 0.0 0.0 22.952129406013558 0.0 38 0.0010944351620128853 0.0 0.0 23.432586442137215 0.0 39 0.0010944351620128853 0.0 0.0 24.097151793292817 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATACG 20 7.0321147E-4 45.0 1 TATAGCG 35 1.211356E-7 45.0 1 CGTCGAC 20 7.0321147E-4 45.0 16 CGATCGA 25 3.8898343E-5 45.0 41 CGACGGT 90 0.0 42.5 28 TTGTGCG 80 0.0 42.1875 1 CGATGAA 1450 0.0 41.896553 19 TTTAGCG 65 0.0 41.53846 1 CCGATGA 1445 0.0 41.107265 18 TACGGCT 1000 0.0 40.95 7 ATCCGGC 55 6.002665E-11 40.909092 6 CGTTTTT 1855 0.0 40.754715 1 TCACGAC 95 0.0 40.263157 25 ACCCGTA 95 0.0 40.263157 39 CACCGAT 1535 0.0 39.429966 16 CCGTAAG 40 3.4566256E-7 39.375 42 CGATCAC 40 3.4566256E-7 39.375 34 TGAATGA 1525 0.0 39.2459 22 GATGAAT 1590 0.0 39.198112 20 ATGAATG 1555 0.0 39.067524 21 >>END_MODULE